BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZE06RM1.SCF screened BAC_end
(1007 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig694 1257 0.0
>3x_Contig694
Length = 2435
Score = 1257 bits (634), Expect = 0.0
Identities = 674/686 (98%), Gaps = 1/686 (0%)
Strand = Plus / Plus
Query: 65 ctttattaatcttggccataaggtggccgagttggtattttttaaacgccaaattaatga 124
|||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||
Sbjct: 1741 ctttattaatcttggccataagtagtccgagttggtatttttttatcgccaaattaatga 1800
Query: 125 gttggtaatcaaatttgccggaagacgtcatagagtttctaacagactccatgaagctcg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 gttggtaatcaaatttgccggaagacgtcatagagtttctaacagactccatgaagctcg 1860
Query: 185 tataatctaaatttttgaaaaagtagtcatggtattgttcaattttagctgtgaacctta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1861 tataatctaaatttttgaaaaagtagtcatggtattgttcaattttagctgtgaacccta 1920
Query: 245 atggcaaagtttcttgaaatattgaattacaaaggcctaaccaaagctttcttctgtaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 atggcaaagtttcttgaaatattgaattacaaaggcctaaccaaagctttcttctgtaat 1980
Query: 305 tgattaccctctgaggaattagtgacggattgaacattaacttataatcagtaggatcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 tgattaccctctgaggaattagtgacggattgaacattaacttataatcagtaggatcct 2040
Query: 365 tatgcaatcccaaaactaaagctgtttgaagcaattgaccagaatgtaataaaagatgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 tatgcaatcccaaaactaaagctgtttgaagcaattgaccagaatgtaataaaagatgct 2100
Query: 425 gatcaagtaacaagttgctttctcttggagaaaaggaacagcaaattctttgataaagca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 gatcaagtaacaagttgctttctcttggagaaaaggaacagcaaattctttgataaagca 2160
Query: 485 tacagcaaaatatgtcttcggaataaaatcggtccacatttaataaagtaagaattctct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 tacagcaaaatatgtcttcggaataaaatcggtccacatttaataaagtaagaattctct 2220
Query: 545 gggacaaagacaaccacttatcataagtaaaatctaatttatgcaaacctagggcaatgc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 gggacaaagacaaccacttatcataagtaaaatctaatttatgcaaacctagggcaatgc 2280
Query: 605 aatccattttgacatcttcgtttaatgacactgtaagaaaatcatgcgaaatttgtagaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 aatccattttgacatcttcgtttaatgacactgtaagaaaatcatgcgaaatttgtagaa 2340
Query: 665 taaccataaaaattgccaagtttttccaaatcggtacgtaagttattcttactcaagttc 724
|||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||
Sbjct: 2341 taaccataaaaattgccaag-ttttccaaatcgttacgtaagttatccttactcaagttc 2399
Query: 725 caatgagctttttcagtatgagcacc 750
||| |||||||| ||||| |||||||
Sbjct: 2400 caacgagcttttccagtaggagcacc 2425
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8568
Number of Sequences: 1807
Number of extensions: 8568
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 1007
length of database: 10,358,551
effective HSP length: 16
effective length of query: 991
effective length of database: 10,329,639
effective search space: 10236672249
effective search space used: 10236672249
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)