BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZE07FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig602 1540 0.0
>3x_Contig602
Length = 2648
Score = 1540 bits (777), Expect = 0.0
Identities = 850/869 (97%), Gaps = 4/869 (0%)
Strand = Plus / Plus
Query: 92 ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 756
Query: 152 taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 816
Query: 212 accatttcatcttttctccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 271
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 accatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 876
Query: 272 caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 936
Query: 332 gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 996
Query: 392 atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 1056
Query: 452 tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 1116
Query: 512 tgtgtaaagacatttcaattgccagtatatgtggcaatattgctgcaggttgtgccatcg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 tgtgtaaagacatttcaattgccagtatatgtggcaatattgctgcaggttgtgccatcg 1176
Query: 572 aacagatcggtgtaccatctcacaatggaatgcactggaataaaacgacttttgcagata 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 aacagatcggtgtaccatctcacaatggaatgcactggaataaaacgacttttgcagata 1236
Query: 632 gattattatattatttatccacttatgaactgaagcagggccacagtgaaatattgaact 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 gattattatattatttatccacttatgaactgaagcagggccacagtgaaatattgaact 1296
Query: 692 ctcttcaaccaatgaaatattaagtctgtaggtacctattgtgaacagttagatcagttt 751
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1297 ctcttcaaccaatgaaatattaagtctgtaggtacctattgggaacagttagatcagttt 1356
Query: 752 tttattttaatttgtattatcatacgtattgggaaagaatattcaatttcagagcattga 811
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1357 tttattttaatttgtattatcatacgtattgggaagaaatattcaatttcagagcattga 1416
Query: 812 tagtgtcgaccagttccctt-ttacttttacggaccgtacaaaaaacaatggtacacttt 870
|||||||||||||||||||| | |||||||||||||||||| ||| |||||||||| ||
Sbjct: 1417 tagtgtcgaccagttcccttctaacttttacggaccgtacagaaacaaatggtacac-tt 1475
Query: 871 actaaacccaattttcgtacatggccgtcattattttcgacccctt-atccaatagaagg 929
|||||||||| || ||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 1476 actaaacccatcttccgtacatggccgtcattattttcgaccacttcatccagtagaagg 1535
Query: 930 gttgctttgcaatc-atagcgattagctt 957
||||||||||||| |||||||| |||||
Sbjct: 1536 tttgctttgcaatcaatagcgatgagctt 1564
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6740
Number of Sequences: 1807
Number of extensions: 6740
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)