BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZE07RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1562 0.0
>3x_Contig1770
Length = 29267
Score = 1562 bits (788), Expect = 0.0
Identities = 855/872 (98%), Gaps = 5/872 (0%)
Strand = Plus / Plus
Query: 48 tcatttttgagtctgatttttcgccgatgctgaaatctgagggcaataaaccaggtgcaa 107
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12204 tcatttttgagtctgatccagcgccgatgctgaaatctgagggcaataaaccaggtgcaa 12263
Query: 108 aaagaaccactaccctctgcaaagcagccctattatcaatttgcagccagtttggagaat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12264 aaagaaccactaccctctgcaaagcagccctattatcaatttgcagccagtttggagaat 12323
Query: 168 tgtttgtatccctgaaggaaaaaaggactagatctcttaggtcttttatggataacggtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12324 tgtttgtatccctgaaggaaaaaaggactagatctcttaggtcttttatggataacggtt 12383
Query: 228 tcgatatcttttctaccgatagattcactgctttagtggattttttctttttcttaggaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12384 tcgatatcttttctaccgatagattcactgctttagtggattttttctttttcttaggaa 12443
Query: 288 ccgctagagaagacgcactgatgttatcatgcttcaagttctcaagagatgagccttgta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12444 ccgctagagaagacgcactgatgttatcatgcttcaagttctcaagagatgagccttgta 12503
Query: 348 cagcacttgaccttcttcttcttctctttgaaccgctttgagaatggcttatatccgtga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12504 cagcacttgaccttcttcttcttctctttgaaccgctttgagaatggcttatatccgtga 12563
Query: 408 ctacatcatcatctctgttatcctttcccccatttgaaccagtacgacctagtttgctta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12564 ctacatcatcatctctgttatcctttcccccatttgaaccagtacgacctagtttgctta 12623
Query: 468 agatttcatccttcgaagtattaccttcacagatactcaatctctcaacccttgatcgta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12624 agatttcatccttcgaagtattaccttcacagatactcaatctctcaacccttgatcgta 12683
Query: 528 cagacagagaggcattgtcgcttgtccctgctggtggaggaaaaactgaatttgaatcag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12684 cagacagagaggcattgtcgcttgtccctgctggtggaggaaaaactgaatttgaatcag 12743
Query: 588 cgaaaccttgggaagtgcctaacgcaggcaactgatcagcatttttagctggcgaaacac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12744 cgaaaccttgggaagtgcctaacgcaggcaactgatcagcatttttagctggcgaaacac 12803
Query: 648 atacagtagacttcggcgagcctgaagcactattggacataatttttgccaaattgcctg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12804 atacagtagacttcggcgagcctgaagcactattggacataatttttgccaaattgcctg 12863
Query: 708 aatattttaactagagttcaatcaaaaactgaaagtaaatgggctctacctttaaaanaa 767
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 12864 aatattttaactagagttcaatcaaaaactgaaagtaaatgggctctacc-ttaaaaaaa 12922
Query: 768 caat-acaacaacgcanagatagtagaagcaccaccactttccaggatacaatctatcgt 826
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12923 caataacaacaacgcaaagatagtagaagcaccaccactttccaggatacaatctatcgt 12982
Query: 827 tatagtgtgaatttatatcanganattcgatctgggagtttactccccanattatctaag 886
|||||||||| || |||||| || ||||||||||||||| ||||| ||| |||||| |||
Sbjct: 12983 tatagtgtgatttaatatca-gagattcgatctgggagtatactcaccagattatc-aag 13040
Query: 887 caattagtctatctttttatcaacaattcaaa 918
||||||||||||| ||||||||||||||||||
Sbjct: 13041 caattagtctatc-ttttatcaacaattcaaa 13071
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7795
Number of Sequences: 1807
Number of extensions: 7795
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)