BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZE08FM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 1350 0.0
>3x_Contig1724
Length = 20938
Score = 1350 bits (681), Expect = 0.0
Identities = 697/701 (99%), Gaps = 1/701 (0%)
Strand = Plus / Plus
Query: 87 cctgttcaatcattggacttcgtttgttcttgatgattggaagcagccaattgttttgca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10770 cctgttcaatcattggacttcgtttgttcttgatgattggaagcagccaattgttttgca 10829
Query: 147 aaaaggtacgaacttaatgaaaaaatgcgatcattatcgtccaatggctgggcatttgac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10830 aaaaggtacgaacttaatgaaaaaatgcgatcattatcgtccaatggctgggcatttgac 10889
Query: 207 gaatgtgagtggtcatacaatatctgctgcgcagaactgctcttgttgaaaccctgaaac 266
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10890 gaatgtgagtggtcagacaatatctgctgcgcagaactgctcttgttgaaaccctgaaac 10949
Query: 267 ccgagcagaatgttccccattctggaagatggtttctgtgatagatactctgtttcttta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10950 ccgagcagaatgttccccattctggaagatggtttctgtgatagatactctgtttcttta 11009
Query: 327 tcgtatacctcttgctctaaactattccacttggcttcgagttgtttcttctgtactaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11010 tcgtatacctcttgctctaaactattccacttggcttcgagttgtttcttctgtactaaa 11069
Query: 387 gcatctcgaagcttcttctttagtttctcgtattctttcttttgttcgtccatagttgtg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11070 gcatctcgaagcttcttctttagtttctcgtattctttcttttgttcgtccatagttgtg 11129
Query: 447 tgagatgagtgttaggttatgttaaatcactttaccgatagagtagaacacaatcaaaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11130 tgagatgagtgttaggttatgttaaatcactttaccgatagagtagaacacaatcaaaac 11189
Query: 507 cagattcaaatccgttcgatagcggatcgtctgtttcatcctttcttgttattatatatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11190 cagattcaaatccgttcgatagcggatcgtctgtttcatcctttcttgttattatatatg 11249
Query: 567 caaattggatgttgaagtagtgcgttctttcaaacaatattaacattggcgacgagtccg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11250 caaattggatgttgaagtagtgcgttctttcaaacaatattaacattggcgacgagtccg 11309
Query: 627 ggtaacagtactggaactcagtttggaatttgaaattcgaagaaccgacgaaaaaaaagc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11310 ggtaacagtactggaactcagtttggaatttgaaattcgaagaaccgacgaaaaaaaagc 11369
Query: 687 caacatgtaaacatcaacataaacagtgttatcaactctagtattccgtttaagagccat 746
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11370 caacatgtaaacatcaacataaacagtgttatcaactctagtatcccgtttaagagccat 11429
Query: 747 aatttttcattgatagcagttataattcggcaaaaacaggt 787
|||||| |||||||||||||||||| |||||||||||||||
Sbjct: 11430 aattttccattgatagcagttataa-tcggcaaaaacaggt 11469
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8478
Number of Sequences: 1807
Number of extensions: 8478
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)