BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZE08RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1006 1594 0.0
>3x_Contig1006
Length = 5179
Score = 1594 bits (804), Expect = 0.0
Identities = 841/850 (98%), Gaps = 3/850 (0%)
Strand = Plus / Plus
Query: 69 ttggttggtgatggaagaaatgagtccaactgaaatgaaggcggagaaacacaaaatata 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1361 ttggttggtgatggaagaaatgagtccaactgaaatgaaggcggagaaacacaaaatata 1420
Query: 129 atggtccaattcgcttaaactcaaattattaatgttacgatggggatagtccgaactaag 188
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 atggtccaattcgcgtaaactcaaattattaatgttacgatggggatagtccgaactaag 1480
Query: 189 aagacaaaactgaaagcaattaaaacatatcaaacggacatataaaccaactcaatagat 248
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1481 aagacaaaactgaaagcaattaaaacataacaaacggacatataaaccaactcaatagat 1540
Query: 249 aatagaaggaaacgggtgtgatacatggggggaaaagcaagaaaaagtctgacaaaacaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1541 aatagaaggaaacgggtgtgatacatggggggaaaagcaagaaaaagtctgacaaaacaa 1600
Query: 309 agtcaaatcacataataatagcttcctttggaacattaacggagatggacttgtgaggca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1601 agtcaaatcacataataatagcttcctttggaacattaacggagatggacttgtgaggca 1660
Query: 369 agactttaccaccgttgatgtaaatttcgtccttgacttcgacatcatcacctagaacgg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 agactttaccaccgttgatgtaaatttcgtccttgacttcgacatcatcacctagaacgg 1720
Query: 429 tgacaccttccaaacgagcccatttaccgacagtagagttccaaccgatgatggtggact 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 tgacaccttccaaacgagcccatttaccgacagtagagttccaaccgatgatggtggact 1780
Query: 489 tgaccaaagcatggtccttgatatgagagttggatagggcaacagatctggtaattctga 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781 tgaccaaagcatggtccttgatatgagagttggatagggcaacagatctggtaattctga 1840
Query: 549 caccatcaccgataacgacgtttggaccgataactacatcaggaccgacctttgcagttg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 caccatcaccgataacgacgtttggaccgataactacatcaggaccgacctttgcagttg 1900
Query: 609 gagaaatcttggcagttgggtcaaccaaaacgttgccaacaatgttttcacccttggcca 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1901 gagaaatcttggcagttgggtcaaccaaaacgttgccaacaatgttttcacccttggcca 1960
Query: 669 acttagctggatctctcttggacaaagagttcaaatatagcactgtaccagataagaagt 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1961 acttagctggatctctcttggacaaagagttcaaatatagcactgtaccagataagaagt 2020
Query: 729 cctttggttgaccgacatccatccagtatccttcaagatcgaaagagtatagggattttt 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2021 cctttggttgaccgacatccatccagtatccttcaagatcgaaagagtataggga-tttt 2079
Query: 789 tgttcgactaagattgggaaagtctccttttcaaataga-gttggcttcaagtcaatcaa 847
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 2080 tgttcgactaagattgggaaagtctccttttc-aatagaggttggcttcaagtcaatcaa 2138
Query: 848 gtcaataactttcgggttcaagatgtacaaaccgncgttgattctgntaccgacgaaatc 907
||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct: 2139 gtcaataacttccgggttcaagatgtacaaaccggcgttgattctgttaccgacgaattc 2198
Query: 908 aactggtttt 917
||||||||||
Sbjct: 2199 aactggtttt 2208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6513
Number of Sequences: 1807
Number of extensions: 6513
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)