BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC18ZE09FM1.SCF screened BAC_end
         (974 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1219                                                        1570   0.0  

>3x_Contig1219 
          Length = 5018

 Score = 1570 bits (792), Expect = 0.0
 Identities = 821/827 (99%), Gaps = 3/827 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   caacggatgaattagaattagaagcgcttgtgcttgcagtagcagtagcggcagcggcag 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3230 caacggatgaattagaattagaagcgcttgtgcttgcagtagcagtagcggcagcggcag 3289

                                                                        
Query: 147  cagaggctccagaagcactagaagcataacccctacgttgttccatagccttacccataa 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3290 cagaggctccagaagcactagaagcataacccctacgttgttccatagccttacccataa 3349

                                                                        
Query: 207  atggacattgttgatctatagctggtaagttcgcattcttcaaagccttgacactctgca 266
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3350 atggacattgttgagcgatagctggtaagttcgcattcttcaaagccttgacactctgca 3409

                                                                        
Query: 267  ttgatccagtggcagagtgcataaatggacagatcttggcagaagaacgaataacagatt 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410 ttgatccagtggcagagtgcataaatggacagatcttggcagaagaacgaataacagatt 3469

                                                                        
Query: 327  ccatgttttttcaatccaaaatgaagacggttaagtgtgtgcaagggaaaccaataaaag 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3470 ccatgttttttcaatccaaaatgaagacggttaagtgtgtgcaagggaaaccaataaaag 3529

                                                                        
Query: 387  aagctttctcactcgcaaagatatagccacttctaacaggtagaatctttttaaattttt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3530 aagctttctcactcgcaaagatatagccacttctaacaggtagaatctttttaaattttt 3589

                                                                        
Query: 447  ctcttcagtgacgaaagtgaaacctggtgtatcaaagaatattttactctagattagaga 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3590 ctcttcagtgacgaaagtgaaacctggtgtatcaaagaatattttactctagattagaga 3649

                                                                        
Query: 507  agcactgaaccaaaaccaaaggtgtatcttaagttaaacctgaagctcatctcttattat 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3650 agcactgaaccaaaaccaaaggtgtatcttaagttaaacctgaagctcatctcttattat 3709

                                                                        
Query: 567  ataattatgaaaacatatcatattatatctttttttgagttttcagtcattttttcctca 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3710 ataattatgaaaacatatcatattatatctttttttgagttttcagtcattttttcctca 3769

                                                                        
Query: 627  gtcattttcattttcaggcaatatgagaggattttacctttgaaatgattccgacattgc 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3770 gtcattttcattttcaggcaatatgagaggattttacctttgaaatgattccgacattgc 3829

                                                                        
Query: 687  cagttccgcagaagatattgtaggaagacagggaagggaaaagggaaaaaaagaaatgct 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3830 cagttccgcagaagatattgtaggaagacagggaagggaaaagggaaaaaaagaaatgct 3889

                                                                        
Query: 747  ggacttaggagctnttctttttggaggttttcagccaataagagtagaggatgatgtgag 806
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3890 ggacttaggagcttttctttttggaggttttcagccaataagagtagaggatgatgtgag 3949

                                                                        
Query: 807  cgaa-gcgaag-agctgtggcagtaat-gctggccctggccctggacctggcagttgaag 863
            |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3950 cgaacgcgaagtagctgtggcagtaatggctggccctggccctggacctggcagttgaag 4009

                                                           
Query: 864  ctggggattggcctggatgagcatggttcgcttagcgggagcaagtc 910
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4010 ctggggattggcctggatgagcatggttcgcttagcgggagcaagtc 4056


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,285
Number of Sequences: 1807
Number of extensions: 18285
Number of successful extensions: 2714
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)