BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZE09RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig694 1342 0.0
>3x_Contig694
Length = 2435
Score = 1342 bits (677), Expect = 0.0
Identities = 689/693 (99%)
Strand = Plus / Plus
Query: 45 gctttattaatcttggccataatttggccgagttggtattttttaatcgccaaattaatg 104
|||||||||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct: 1740 gctttattaatcttggccataagtagtccgagttggtatttttttatcgccaaattaatg 1799
Query: 105 agttggtaatcaaatttgccggaagacgtcatagagtttctaacagactccatgaagctc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 agttggtaatcaaatttgccggaagacgtcatagagtttctaacagactccatgaagctc 1859
Query: 165 gtataatctaaatttttgaaaaagtagtcatggtattgttcaattttagctgtgaaccct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 gtataatctaaatttttgaaaaagtagtcatggtattgttcaattttagctgtgaaccct 1919
Query: 225 aatggcaaagtttcttgaaatattgaattacaaaggcctaaccaaagctttcttctgtaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1920 aatggcaaagtttcttgaaatattgaattacaaaggcctaaccaaagctttcttctgtaa 1979
Query: 285 ttgattaccctctgaggaattagtgacggattgaacattaacttataatcagtaggatcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 ttgattaccctctgaggaattagtgacggattgaacattaacttataatcagtaggatcc 2039
Query: 345 ttatgcaatcccaaaactaaagctgtttgaagcaattgaccagaatgtaataaaagatgc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 ttatgcaatcccaaaactaaagctgtttgaagcaattgaccagaatgtaataaaagatgc 2099
Query: 405 tgatcaagtaacaagttgctttctcttggagaaaaggaacagcaaattctttgataaagc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 tgatcaagtaacaagttgctttctcttggagaaaaggaacagcaaattctttgataaagc 2159
Query: 465 atacagcaaaatatgtcttcggaataaaatcggtccacatttaataaagtaagaattctc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 atacagcaaaatatgtcttcggaataaaatcggtccacatttaataaagtaagaattctc 2219
Query: 525 tgggacaaagacaaccacttatcataagtaaaatctaatttatgcaaacctagggcaatg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 tgggacaaagacaaccacttatcataagtaaaatctaatttatgcaaacctagggcaatg 2279
Query: 585 caatccattttgacatcttcgtttaatgacactgtaagaaaatcatgcgaaatttgtaga 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2280 caatccattttgacatcttcgtttaatgacactgtaagaaaatcatgcgaaatttgtaga 2339
Query: 645 ataaccataaaaattgccaagttttccaaatcgttacgtaagttatccttactcaagttc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2340 ataaccataaaaattgccaagttttccaaatcgttacgtaagttatccttactcaagttc 2399
Query: 705 caacgagcttttccagtaggagcaccggtggca 737
|||||||||||||||||||||||||||||||||
Sbjct: 2400 caacgagcttttccagtaggagcaccggtggca 2432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7254
Number of Sequences: 1807
Number of extensions: 7254
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)