BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF02FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1334 1580 0.0
>3x_Contig1334
Length = 7302
Score = 1580 bits (797), Expect = 0.0
Identities = 874/894 (97%), Gaps = 8/894 (0%)
Strand = Plus / Minus
Query: 94 acaatgtgagatggttgatccaaatcccaagattatatgatgtttataagaaaacgggaa 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1696 acaatgtgagatggttgatccaaatcccaagattatatgatgtttataagaaaacgggaa 1637
Query: 154 ttgtcgagaacttttttgatatctgtaaaagcatttttttgccattatttgaggtaacac 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 ttgtcgagaacttttttgatatctgtaaaagcatttttttgccattatttgaggtaacac 1577
Query: 214 aaaatccacattcccaccctaagctacacattttcctacaacgcgttgtaggttttgata 273
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 aaaatccacaatcccaccctaagctacacattttcctacaacgcgttgtaggttttgata 1517
Query: 274 gtgttgatgatgaatctaaagtggataggcgcttccagaaaaaatatccaaaaccaactc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 gtgttgatgatgaatctaaagtggataggcgcttccagaaaaaatatccaaaaccaactc 1457
Query: 334 tttgggattcaactcaaaatccaccatattcgtaccaactatactacttgtacgcgaaca 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1456 tttgggattcaactcaaaatccaccatattcgtaccaactatactacttgtacgcgaaca 1397
Query: 394 ttgcatctttgaactggtggagagcaaagcgtggtttcaatacgttagtcttaagaccac 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 ttgcatctttgaactggtggagagcaaagcgtggtttcaatacgttagtcttaagaccac 1337
Query: 454 attgtggtgaggcaggagatcctgaacatttaatttcagcttacttgttagctcaaggaa 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 attgtggtgaggcaggagatcctgaacatttaatttcagcttacttgttagctcaaggaa 1277
Query: 514 ttaatcatggtatactcttgagaaagattccattcgtacaatatttattctatttggatc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 ttaatcatggtatactcttgagaaagattccattcgtacaatatttattctatttggatc 1217
Query: 574 aaattgggattgctatgtccccattatcaaataacgcgttgttcttgacgtacgataaga 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1216 aaattgggattgctatgtccccattatcaaataacgcgttgttcttgacgtacgataaga 1157
Query: 634 acccattccaatactatttcaaaagaggtctcaatgtttcgctttcaactgatgatccat 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 acccattccaatactatttcaaaagaggtctcaatgtttcgctttcaactgatgatccat 1097
Query: 694 tgcaattttcttacactagagaacctttaattgaagagtattctgttgctgcacaaatat 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 tgcaattttcttacactagagaacctttaattgaagagtattctgttgctgcacaaatat 1037
Query: 754 acaaattgtccaacgttgatatgtgtgaacttgccaaaaactctgttatgcagagtggtt 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 acaaattgtccaacgttgatatgtgtgaacttgccaaaaactctgttatgcagagtggtt 977
Query: 814 gggaagctcaaattaaa-ggcactggggatcgt--aacactttgaaaaagaaggtatcga 870
||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct: 976 gggaagctcaaattaaaaggcactgg--atcggtaaacactttgaaaaagaaggtatcga 919
Query: 871 agggaatgatcttngaaaaa-ctatgttncagatattagagtcaa-tatagatatgaaac 928
||||||||||||| ||||| | ||||| ||||||| |||||||| ||||||||||||||
Sbjct: 918 agggaatgatcttgaaaaaaccaatgttccagatataagagtcaattatagatatgaaac 859
Query: 929 tttgaaaactgnacttgnactttgnaaacattttttccagtttcgcaagtcttt 982
||||||||||| ||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 858 tttgaaaactgaacttgaacttgtcaaaca-tttttccagtttcgcaagtcttt 806
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7327
Number of Sequences: 1807
Number of extensions: 7327
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)