BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF02RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1126 908 0.0
3x_Contig1753 692 0.0
>3x_Contig1126
Length = 5421
Score = 908 bits (458), Expect = 0.0
Identities = 477/482 (98%), Gaps = 1/482 (0%)
Strand = Plus / Plus
Query: 46 gctttcttatagataggtagattttatacttgcactctcatgtattaattctataaaatt 105
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 4941 gctttcttatagataggtagagataatacttgcactctcatgtattaattctataaaatt 5000
Query: 106 ttgatataagtgtatatatacttaccactgcaatattttcatcacgcaaaagtcagttgg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5001 ttgatataagtgtatatatacttaccactgcaatattttcatcacgcaaaagtcagttgg 5060
Query: 166 acttctacttctcgacaatgtctcgagacgagtgatcaatatccttctgtacctcgtcct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5061 acttctacttctcgacaatgtctcgagacgagtgatcaatatccttctgtacctcgtcct 5120
Query: 226 tgagttttgaaatctcttggataagttggtctttgtgcacatccgtagctatgccttctt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5121 tgagttttgaaatctcttggataagttggtctttgtgcacatccgtagctatgccttctt 5180
Query: 286 cggtatccccattcacttctggccctaatgtcttgtcctttagagtctgttcatacattt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5181 cggtatccccattcacttctggccctaatgtcttgtcctttagagtctgttcatacattt 5240
Query: 346 cttgccattcaactttctgaggtttgaaccaagaagatttagataaccatttgtgctttc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5241 cttgccattcaactttctgaggtttgaaccaagaagatttagataaccatttgtgctttc 5300
Query: 406 tctttttcttaccatgggattcatcagaaagtttctcctgggcagattctaattcagcaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5301 tctttttcttaccatgggattcatcagaaagtttctcctgggcagattctaattcagcaa 5360
Query: 466 caagtttcctctgtctagcaacttgttccggatccattgggtcttcaatttctacgaact 525
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 5361 caagtttcctctgtctagcaacttgttccggatccattgggtc-tccatttctacgaact 5419
Query: 526 ct 527
||
Sbjct: 5420 ct 5421
>3x_Contig1753
Length = 23959
Score = 692 bits (349), Expect = 0.0
Identities = 367/372 (98%), Gaps = 1/372 (0%)
Strand = Plus / Plus
Query: 530 actgagtacagacataccaatggctttaagaagtttaggcattttctttctataactcat 589
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgagtaca-acataccaatggctttaagaagtttaggcattttctttctataactcat 59
Query: 590 atgcccgtcaactatctcactgcagtccacattttcaatatccggaacactatttattgg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 atgcccgtcaactatctcactgcagtccacattttcaatatccggaacactatttattgg 119
Query: 650 tgatattcctgcaacagtactcaaccctccacctgtggctctgaataaataacctaaaat 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgatattcctgcaacagtactcaaccctccacctgtggctctgaataaataacctaaaat 179
Query: 710 ccaatctctatttgaatatccattcaaaaatcttccactaacaactgatcgggcgagaat 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ccaatctctatttgaatatccattcaaaaatcttccactaacaactgatcgggcgagaat 239
Query: 770 catttcatctcttttgtaaacgacaggagaaccaaacaaataagcattttctattattcc 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 catttcatctcttttgtaaacgacaggagaaccaaacaaataagcattttctattattcc 299
Query: 830 gatagcacctttttttgctaacctcactaaacatgaataaatgacacgagatcctaagna 889
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 300 gatagcacctttttttgctaactcaactaaacatgaataaatgacacgagatcctaagga 359
Query: 890 aaacccgactaa 901
||||||||||||
Sbjct: 360 aaacccgactaa 371
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7300
Number of Sequences: 1807
Number of extensions: 7300
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)