BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF03FM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1635 0.0
>3x_Contig1784
Length = 28126
Score = 1635 bits (825), Expect = 0.0
Identities = 879/895 (98%), Gaps = 2/895 (0%)
Strand = Plus / Minus
Query: 85 atcggtgattccgcgatggaaggtgtattctctgttggattatttgtaattgccagggca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26657 atcggtgattccgcgatggaaggtgtattctctgttggattatttgtaattgccagggca 26598
Query: 145 ttgctggagccagatcatgaattgaacacctatctatctctattcatccgtgatgaagtt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26597 ttgctggagccagatcatgaattgaacacctatctatctctattcatccgtgatgaagtt 26538
Query: 205 atttcatggtacatttatcatgaaccgttctattgttgaagatcctcacttatatgccat 264
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26537 atttcatggtacagt-agcatgaaccgttctattgttgaagatcctcacttatatgccat 26479
Query: 265 tgttctgacgaacgttgacttgattataagaaaggtggcccaatttggacatatgagttc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26478 tgttctgacgaacgttgacttgattataagaaaggtggcccaatttggacatatgagttc 26419
Query: 325 ttctccaagtgtagcaactcagtatgtgttagatgctatcagtgctgctgtgagtcctag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26418 ttctccaagtgtagcaactcagtatgtgttagatgctatcagtgctgctgtgagtcctag 26359
Query: 385 aaatttggcgaagtgtgatcaaagtttcatggcatggttatgagatgaacagttcatgat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26358 aaatttggcgaagtgtgatcaaagtttcatggcatggttatgagatgaacagttcatgat 26299
Query: 445 gatattatatccgatgtaaaattaaatttgtatactagttaaaaaaaaatgtaaaaataa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26298 gatattatatccgatgtaaaattaaatttgtatactagttaaaaaaaaatgtaaaaataa 26239
Query: 505 tgtatcgatattactaacatgattcaatcattactctacaggttttcacaagttaattgc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26238 tgtatcgatattactaacatgattcaatcattactctacaggttttcacaagttaattgc 26179
Query: 565 atttttagtcaagatttccttccaatatacccttgttatgatcgttataatggccatatt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26178 atttttagtcaagatttccttccaatatacccttgttatgatcgttataatggccatatt 26119
Query: 625 tttctgttaactgggtactaagaggaggtttttcaggggactccttcttgagccacatga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26118 tttctgttaactgggtactaagaggaggtttttcaggggactccttcttgagccacatga 26059
Query: 685 cggcttttgcccaatctagattcagcctttggtacaaaagataaattaaaactatgcaaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26058 cggcttttgcccaatctagattcagcctttggtacaaaagataaattaaaactatgcaaa 25999
Query: 745 aaagctcaaatatggatgtaacaaaaccagcagtacttgtgagtgccattctttctgtca 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25998 aaagctcaaatatggatgtaacaaaaccagcagtacttgtgagtgccattctttctgtca 25939
Query: 805 catcaactgtgggcgatccttgagatagccaaaatttgataccatgaacataccctncac 864
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 25938 catcaactgtggcggatccttgagatagccaaaatttgataccatgaacataccctccac 25879
Query: 865 tgtaatattaaaaatttccagtggcaatcattgattaaaagaaagttg-aacaaccacca 923
|||||||| ||||||| | |||| |||||||||| |||||||||||| |||| ||||||
Sbjct: 25878 tgtaatataaaaaattccaagtgcaaatcattgataaaaagaaagttgaaacacccacca 25819
Query: 924 ctgctattactgncaagctgtaaaatttgggtcttgtgtaccaaatgcgtttaac 978
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25818 ctgctatcactgccaagctgtaaaatttgggtcttgtgtaccaaatgcgtttaac 25764
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7269
Number of Sequences: 1807
Number of extensions: 7269
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)