BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF03RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1673 0.0
3x_Contig25 341 2e-93
>3x_Contig1729
Length = 15481
Score = 1673 bits (844), Expect = 0.0
Identities = 891/903 (98%), Gaps = 3/903 (0%)
Strand = Plus / Plus
Query: 43 gctttcttcatgtaatgaaatcaa-ttgaaaatacgcctagttcttaatcaatatcggag 101
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 4843 gctttcttcatgtaatgaaatcaacttcaaaatacgcctagttcttaatcaatatcggag 4902
Query: 102 aggttttcgtatttgagtgtgtcgttatcatactccaatctgctgtgaatcagtaagctc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4903 aggttttcgtatttgagtgtgtcgttatcatactccaatctgctgtgaatcagtaagctc 4962
Query: 162 tccaatgttgcataaataggacaccatattttgatgtataaatactcattgacgctcaga 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4963 tccaatgttgcataaataggacaccatattttgatgtataaatactcattgacgcgcaga 5022
Query: 222 actctaggtatcaatgtgaagtccacaatagaaccgatgcaggcggtcagttcttccctc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5023 actctaggtatcaatgtgaagtccacaatagaaccgatgcaggcggtcagttcttccctc 5082
Query: 282 ttataactataatttggattcccgaagaaaagtgtcaagttctgtctcccccagatttgc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5083 ttataactataatttggattcccgaagaaaagtgtcaagttctgtctcccccagatttgc 5142
Query: 342 accttaagaagttcttcgaaagggttttcaattgtacattgagtaccgaccatgccacta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5143 accttaagaagttcttcgaaagggttttcaattgtacattgagtaccgaccatgccacta 5202
Query: 402 cgagtaaggtatatagtcacattgttaccattgtcgaaaatacttaaaattttagcagta 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 cgagtaaggtatatagtcacattgttaccattgtcgaaaatacttaaaattttagcagta 5262
Query: 462 actttgatgtctttgtgatccatttgcacgttattcttaatatcaataatgtcaacagtt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 actttgatgtctttgtgatccatttgcacgttattcttaatatcaataatgtcaacagtt 5322
Query: 522 ttaggatttcgggtaccaaatagctcaatgggacgagtagcagcgtcttcttctattttg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 ttaggatttcgggtaccaaatagctcaatgggacgagtagcagcgtcttcttctattttg 5382
Query: 582 tcaacaccttccctcttcaattggttctcaagcttggcaattgaatcgtcttttgggtct 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 tcaacaccttccctcttcaattggttctcaagcttggcaattgaatcgtcttttgggtct 5442
Query: 642 tctgaggaaccggcagagtcatagaaagcttgttcctgtagcagttgcggattctcagac 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5443 tctgaggaaccggcagagtcatagaaagcttgttcctgtagcagttgcggattctcagac 5502
Query: 702 attctattcttggatattggcaagaagcgactcatggttaacgtgtacagttgtatgacc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5503 attctattcttggatattggcaagaagcgactcatggttaacgtgtacagttgtatgacc 5562
Query: 762 tctgatggcatccgttt-aatattttatttcttagaggcttcaataacttgtattcctca 820
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5563 tctgatggcatccgtttaaatattttatttcttagaggcttcaataacttgtattcctca 5622
Query: 821 gtgttaactggcgtggtaggagtaatgggatcggcggtcagtattacagtgtttagctta 880
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 5623 gtggtaactggcgtggtaggagtaatgggatcggcgtcaagtataacagtgtttagctta 5682
Query: 881 ccttgaaataattgacatttaacagtngaatttgattatgatacttcgatgggtantatt 940
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 5683 ccttgaaataattgacatttaacagt-gaatttgaatatgatacttcgatgggtaatatt 5741
Query: 941 act 943
|||
Sbjct: 5742 act 5744
>3x_Contig25
Length = 1081
Score = 341 bits (172), Expect = 2e-93
Identities = 603/735 (82%), Gaps = 10/735 (1%)
Strand = Plus / Plus
Query: 197 gtataaatactcattgacgctcagaactctaggtatcaatgtgaagtccacaatagaacc 256
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtataaatactcattgacgcgc-gaactctaggtatcaatgtgaagtccacaatagaacc 67
Query: 257 gatgcaggcggtcagttcttccctcttataactataatttggattcccgaagaaaagtgt 316
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 68 gatgcaggcggtcagttcttccctcttataactataatttggattcgcgaagaaaagtgt 127
Query: 317 caagttctgtctcccccagatttgcaccttaagaagttcttcgaaagggttttcaattgt 376
||||| ||| | ||||||| | |||||||||| || ||||||||||| ||||||
Sbjct: 128 gaagttgtgtgtgggggagatttggaggttaagaagttgttggaaagggttttgaattgt 187
Query: 377 acattgagtaccgaccatgccactacgagtaaggtatatagtcacattgttaccattgtc 436
|||||||||| || ||| | || |||||||||||||||| | ||||||| |||||
Sbjct: 188 acattgagtagggaggatgggagtaggagtaaggtatatagtgagattgttaggattgtg 247
Query: 437 gaaaatacttaaaattttagcagtaactttgatgtctttgtgatccatttgcacgttatt 496
||||||| |||| ||||||| ||||| |||||||| |||||||| ||||| | ||||||
Sbjct: 248 gaaaatagttaagattttaggagtaagtttgatgtgtttgtgatggatttggaggttatt 307
Query: 497 cttaatatcaataatgtcaacagttttaggatttcgggtaccaaatagctcaatgggacg 556
||||||| |||||||| || ||||||||||||| | ||| |||||| | ||||||| |
Sbjct: 308 gttaatatgaataatgtgaagagttttaggatttggtgtaggaaataggtgaatgggagg 367
Query: 557 agtagcagcgtcttcttctattttgtcaacaccttccctcttcaattggttctcaagctt 616
|||| || || || || |||||||| || | || | || |||| ||| | ||| ||
Sbjct: 368 agtatgagggtgttgttgtattttgtgaagaggttgggtgttgaattcgttgtgaaggtt 427
Query: 617 ggcaattgaatcgtcttttgggtcttctgaggaaccggcagagtcatagaaagcttgttc 676
|| |||||||| || |||||||| || ||||||| || ||||| |||||||| |||||
Sbjct: 428 gggaattgaatggtgttttgggtgttgtgaggaagggggagagtgatagaaaggttgttg 487
Query: 677 ctgtagcagttgcggattct-cagacattctattcttggatattggcaagaagcga-ctc 734
||||| ||||| ||||| | |||| ||| |||| ||||||||||| |||||| || ||
Sbjct: 488 gtgtaggagttggggattgtgcagagattgtattgttggatattgggaagaagggagctg 547
Query: 735 atggttaa-cgtgta-cagttgtatgacctctgatggcatccg--tttaatatttta-tt 789
|||||||| |||||| |||||||||| | |||||| || | || ||||||||| ||
Sbjct: 548 atggttaagcgtgtaggagttgtatgaggtgtgatgggatggggtttaaatattttattt 607
Query: 790 tcttagaggcttcaataacttgtatt-cctcagtgttaactggcgtggtaggagtaatgg 848
| ||||||| || ||||| ||||||| | |||| ||| ||| ||||||||||||||||
Sbjct: 608 tgttagagggttgaataagttgtattgggtgagtggtaagtggggtggtaggagtaatgg 667
Query: 849 gatcggcggtcagtattacagtgtttagcttaccttgaaataattgacatttaacagtng 908
||| || | ||||| | ||||||||| ||| |||| ||| |||| |||||| ||| |
Sbjct: 668 gatgggggtgaagtataagagtgtttaggttaggttgagatagttgagatttaagagt-g 726
Query: 909 aatttgattatgata 923
||||||| |||||||
Sbjct: 727 aatttgaatatgata 741
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6595
Number of Sequences: 1807
Number of extensions: 6595
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)