BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF04FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 1671 0.0
>3x_Contig1496
Length = 9544
Score = 1671 bits (843), Expect = 0.0
Identities = 862/869 (99%)
Strand = Plus / Minus
Query: 88 tgggtaatatatttcatttctctagcaaattgcatgtttggtacaccaaattggaaagag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8229 tgggtaatatatttcatttctctagcaaattgcatgtttggtacaccaaattggaaagag 8170
Query: 148 ccagtttcaacgatgagaacatcaccatcattgaaataatttggaataatttccttcaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8169 ccagtttcaacgatgagaacatcaccatcattgaaataatttggaataatttccttcaaa 8110
Query: 208 ctcttttgagtgatactgtcattattgtcatattcacagctatggtttgatttaggaact 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8109 ctcttttgagtgatactgtcattattgtcatattcacagctatggtttgatttaggaact 8050
Query: 268 ggtgggtaagagaatgatagttttgacttatccaagttatcattaacgtatttaagcacc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8049 ggtgggtaagagaatgatagttttgacttatccaagttatcattaacgtatttaagcacc 7990
Query: 328 gatacaaaattagcttcttcgacagtacttgcatttttatccttgatatcaatgaattgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7989 gatacaaaattagcttcttcgacagtacttgcatttttatccttgatatcaatgaattgt 7930
Query: 388 atgatgttatttgacaattcgataattctggcattctcgttgaagtggaatgagtaatac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7929 atgatgttatttgacaattcgataattctggcattctcgttgaagtggaatgagtaatac 7870
Query: 448 ccacagttgatttcatttttggccggaccaaagtgcaaaatcaaatcactagaatccaca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7869 ccacagttgatttcatttttggccggaccaaagtgcaaaatcaaatcactagaatccaca 7810
Query: 508 gttgcttgcatttctttgcctgtttcagcacctttgtaaagacccaaatatttaggattg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7809 gttgcttgcatttctttgcctgtttcagcacctttgtaaagacccaaatatttaggattg 7750
Query: 568 cgttcatccaaagtggatttacccatagccgtgttataattccaaacatctgccgtttca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7749 cgttcatccaaagtggatttacccatagccgtgttataattccaaacatctgccgtttca 7690
Query: 628 ataaattgacgcaactccttccttagattgaacctatcaactaggagatcagagaagaca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7689 ataaattgacgcaactccttccttagattgaacctatcaactaggagatcagagaagaca 7630
Query: 688 gatggagcattagattcatagatccattgcaacaatctgtcaccagcgatcttagtggca 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7629 gatggagcattagattcatagatccattgcaacaatctgtcaccagcgatcttagtggca 7570
Query: 748 ttctcatccttataagattcaatgaccgtatccatatcgattattggattctgaatcaaa 807
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7569 ttctcatccttataagattcactgaccgtatccatatcgattattggattctgaatcaaa 7510
Query: 808 tntttgttagagactaacttgtcagcgaaatcaactgggaataacacatatcctgggtta 867
| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct: 7509 tttttgttagagactaacttgtcagcgaaatcaactggaataaacacatatcctggttta 7450
Query: 868 ctgttcttgcaaatgtctacaatcacttgatcaagtctatctgcngcagtgttaatatcg 927
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7449 ctgttcttgcaaatgtctacaatcacttgatcaagtctatctgcggcagtgttaatatcg 7390
Query: 928 tctagaaaagcgctcgagcagcatactct 956
|||||||||||||||||||||||||||||
Sbjct: 7389 tctagaaaagcgctcgagcagcatactct 7361
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7298
Number of Sequences: 1807
Number of extensions: 7298
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)