BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF04RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 1661 0.0
>3x_Contig1649
Length = 14442
Score = 1661 bits (838), Expect = 0.0
Identities = 855/858 (99%), Gaps = 2/858 (0%)
Strand = Plus / Plus
Query: 48 ctcatctcca-tgtacttttttatagagtccattgattcagaattatcttcggctt-acc 105
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 13162 ctcatctccaatgtacttttctatagagtccattgattcagaattatcttcggcttcacc 13221
Query: 106 atatttctctctttgctgaaattgaactgattttcgcgcattaagcatgatattttcaat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13222 atatttctctctttgctgaaattgaactgattttcgcgcattaagcatgatattttcaat 13281
Query: 166 ctgtgattcatcatgttggatatttgacaaaaaatcgtcaattgagttaatttgcagttc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13282 ctgtgattcatcatgttggatatttgacaaaaaatcgtcaattgagttaatttgcagttc 13341
Query: 226 ttgttcactacgaatggaggcttttcgtgatatgctcttcctagcagcgtcaagtttcag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13342 ttgttcactacgaatggaggcttttcgtgatatgctcttcctagcagcgtcaagtttcag 13401
Query: 286 agtagagatactgcttctgttttgtaattgtgaatttctcgctaatcctgtaataccgtc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13402 agtagagatactgcttctgttttgtaattgtgaatttctcgctaatcctgtaataccgtc 13461
Query: 346 tctcatgttagtcagttctagagatttacgttggtgcaaaatcatttcagcttcttctaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13462 tctcatgttagtcagttctagagatttacgttggtgcaaaatcatttcagcttcttctaa 13521
Query: 406 ttttctttgttcgataagattttgttgttctagaactttattttgagctaattccgagtt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13522 ttttctttgttcgataagattttgttgttctagaactttattttgagctaattccgagtt 13581
Query: 466 tcttaaacgttccaaaataacattgtcagcccctttacaaataagcaggaccctgtcgtc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13582 tcttaaacgttccaaaataacattgtcagcccctttacaaataagcaggaccctgtcgtc 13641
Query: 526 atcattaggcatctttacagcaactgacattctttttctttgtgaatcaaaattaatgta 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13642 atcattaggcatctttacagcaactgacattctttttctttgtgaatcaaaattaatgta 13701
Query: 586 ctccaaaacttcatagtcttcaacaataggctgatcatcaaatccattagggtaggtggc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13702 ctccaaaacttcatagtcttcaacaataggctgatcatcaaatccattagggtaggtggc 13761
Query: 646 aattgaaagcgtgcttgaatttctattcgtcacaacaaaacccatgtctcttgctgcagt 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13762 aattgaaagcgtgcttgaatttctattcgtcacaacaaaacccatgtctcttgctgcagt 13821
Query: 706 cacaagagctagttcatcaggtgaagaagattggtataaaatagaatctgtcccatcatg 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13822 cacaagagctagttcatcaggtgaagaagattggtataaaatagaatctgtcccatcatg 13881
Query: 766 cgttttctttggtagacatgtgtggcataacgccaatgaaagaatgaagaattttgccct 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13882 cgttttctttggtagacatgtgtggcataacgccaatgaaagaatgaagaattttgccct 13941
Query: 826 gattgagaattcggtatttggatgtttttggatgtatagaagtaagtccactgtggtctt 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13942 gattgagaattcggtatttggatgtttttggatgtatagaagtaagtccactgtggtctt 14001
Query: 886 taatccgtttttttcttc 903
||||||||||||||||||
Sbjct: 14002 taatccgtttttttcttc 14019
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7921
Number of Sequences: 1807
Number of extensions: 7921
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)