BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF05FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1643 0.0
>3x_Contig1303
Length = 8112
Score = 1643 bits (829), Expect = 0.0
Identities = 875/885 (98%), Gaps = 5/885 (0%)
Strand = Plus / Minus
Query: 89 ttagccatcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 ttagccatcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttc 1706
Query: 149 ctatagtgagtgagtgtttcttgttgaaaagaaaaggtgcaagaaatacttccaaacaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 ctatagtgagtgagtgtttcttgttgaaaagaaaaggtgcaagaaatacttccaaacaca 1646
Query: 209 ggttttaagcttgttgtggtttttatttacaagaacgctaatcataatcactttacaaga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 ggttttaagcttgttgtggtttttatttacaagaacgctaatcataatcactttacaaga 1586
Query: 269 aattcagaaggaatttatcccaattttttcacaggtaaggactgggttttattataatta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 aattcagaaggaatttatcccaattttttcacaggtaaggactgggttttattataatta 1526
Query: 329 ttattttttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 ttattttttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgc 1466
Query: 389 ataagttcatctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 ataagttcatctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcag 1406
Query: 449 ataatgggccagatttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 ataatgggccagatttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctg 1346
Query: 509 agatgaaacagctatgcgagatgatgaaggaactcttaatggaagaatcgaatattcagc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 agatgaaacagctatgcgagatgatgaaggaactcttaatggaagaatcgaatattcagc 1286
Query: 569 cggttcaatcgccggtgactgtttgtggtgatattcacggacaatttcatgaccttttag 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 cggttcaatcgccggtgactgtttgtggtgatattcacggacaatttcatgaccttttag 1226
Query: 629 aactattcagaactgctggtgggtttcctgatcaagtaaactatatttttcttggtgact 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 aactattcagaactgctggtgggtttcctgatcaagtaaactatatttttcttggtgact 1166
Query: 689 atgtagatcgtggttattacagtttggagacgttcacacttcttatgtgtttgaaagtga 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 atgtagatcgtggttattacagtttggagacgttcacacttcttatgtgtttgaaagtga 1106
Query: 749 aatatccttccagaattactttggttagaggaaatcatgagtcgaggcaaattacacaag 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 aatatccttccagaattactttggttagaggaaatcatgagtcgaggcaaattacacaag 1046
Query: 809 tttatgggttttatgaggaatgttt-aataagtatggttccacaacggtttggaagtatt 867
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1045 tttatgggttttatgaggaatgtttaaataagtatggttccacaacggtttggaagtatt 986
Query: 868 gttgncaagtgtttgatttcttaactttgncagctattattgacggnaaaa-tttatgtg 926
|||| |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 985 gttgtcaagtgtttgatttcttaactttggcagctattattgacgggaaaattttatgtg 926
Query: 927 tgcatggtggttnngtct-ccgaga-taaaatgcttgatcagatc 969
|||||||||||| |||| |||||| || ||||||||||||||||
Sbjct: 925 tgcatggtggtt-tgtctcccgagattagaatgcttgatcagatc 882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8033
Number of Sequences: 1807
Number of extensions: 8033
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)