BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF05RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1477 1661 0.0
>3x_Contig1477
Length = 9322
Score = 1661 bits (838), Expect = 0.0
Identities = 858/862 (99%), Gaps = 2/862 (0%)
Strand = Plus / Plus
Query: 50 cataaaactaaccaacttattgaagattttggtaccattaggcaagaaaaagattgaacc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 cataaaactaaccaacttattgaagattttggtaccattaggcaagaaaaagattgaacc 2118
Query: 110 aggtgatattggatctgttatgtataactcctgtttggtcgatacctcatgtgcagtggt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2119 aggtgatattggatctgttatgtataactcctgtttggtcgatacctcatgtgcagtggt 2178
Query: 170 ggctgcactatcgacagcttgtgggccctcattatgattggaacagagtcttttgacaaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 ggctgcactatcgacagcttgtgggccctcattatgattggaacagagtcttttgacaaa 2238
Query: 230 ctgacaaggtacgcccgcatttcgtactggtaggtagtttattcgctttaataacatatt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 ctgacaaggtacgcccgcatttcgtactggtaggtagtttattcgctttaataacatatt 2298
Query: 290 tcagaacgagtctcttcaatgaatctgcccacagcgaactctcagctcgttgttgtaatt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 tcagaacgagtctcttcaatgaatctgcccacagcgaactctcagctcgttgttgtaatt 2358
Query: 350 acatttctaattcgatctttccagtgtaggtagtttccatgcatggttgtttagtttttt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 acatttctaattcgatctttccagtgtaggtagtttccatgcatggttgtttagtttttt 2418
Query: 410 tcactatttaactcagtagaaacttgaagttcccacttgcatgtgatgagacagaacgat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 tcactatttaactcagtagaaacttgaagttcccacttgcatgtgatgagacagaacgat 2478
Query: 470 gcaatgtagaacatggacctatctgcctacagtactacttgcttcaaagttagctagacg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 gcaatgtagaacatggacctatctgcctacagtactacttgcttcaaagttagctagacg 2538
Query: 530 aatagagttacttacatttgatctcttttatatatatatgatattacgagagttgccaat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 aatagagttacttacatttgatctcttttatatatatatgatattacgagagttgccaat 2598
Query: 590 agataataaatacatcgttattgagtccaaataacgatttagaattcggagtcaagataa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 agataataaatacatcgttattgagtccaaataacgatttagaattcggagtcaagataa 2658
Query: 650 tgctgtaagccctcgaactcagacgccttataaagggcaacttttccttgccatttgcct 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 tgctgtaagccctcgaactcagacgccttataaagggcaacttttccttgccatttgcct 2718
Query: 710 ccatttttacctccgccacctttcagctgagatactactgatttcaacttgtctgacacc 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 ccatttttacctccgccacctttcagctgagatactactgatttcaacttgtctgacacc 2778
Query: 770 tcttggattctgttactagaatcagaaacaatgatgatagccccacctccagaagccttt 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 tcttggattctgttactagaatcagaaacaatgatgatagccccacctccagaagccttt 2838
Query: 830 tctcttcctagc-agaacgtagcagtagtctttcaatgatgatccagccataagctggtt 888
|||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 2839 tctcttcc-agcaagaacgtagcagtagtcttccaatgatgatccagcaataagctggtt 2897
Query: 889 attttcattgtaaagttgtgtt 910
||||||||||||||||||||||
Sbjct: 2898 attttcattgtaaagttgtgtt 2919
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8519
Number of Sequences: 1807
Number of extensions: 8519
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)