BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF07RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig971 505 e-143
3x_Contig1238 492 e-139
>3x_Contig971
Length = 3245
Score = 505 bits (255), Expect = e-143
Identities = 285/291 (97%), Gaps = 3/291 (1%)
Strand = Plus / Plus
Query: 42 gcttgttggcttggctggtgtctttttcaagaaagtttctggtaatacatggatgtataa 101
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2958 gcttgttggcttggctggtgtccatttcaagaaagtttctggtaatacatggatgtataa 3017
Query: 102 ggaattggctacacatattttgaaggaattaaatttatagattaaaactgtatacacact 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3018 ggaattggctacacatattttgaaggaattaaatttatagattaaaactgtatacacact 3077
Query: 162 atgtatgccataatcatttcctaatgcaagtctagtttataatgttacatgccacttttg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3078 atgtatgccataatcatttcctaatgcaagtctagtttataatgttacatgccacttttg 3137
Query: 222 tctcattatgtcattacatttttctctatgcaataactacgtgaggaaaccaaacgacta 281
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3138 tctcattatgtcattacatttttctctatgcaataactacgtgagg-aaccaaacgacta 3196
Query: 282 ttctaagaaactcatttacaaagttgttcaagctcctcattcgccagtaaa 332
|||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 3197 ttctaagacactcatttac-aagttgttcaagct-ctcattcgccagtaaa 3245
>3x_Contig1238
Length = 5289
Score = 492 bits (248), Expect = e-139
Identities = 274/280 (97%), Gaps = 2/280 (0%)
Strand = Plus / Minus
Query: 607 gttcaggaacttcaacga-taggaattttgggatcaattggcttgtactgttcatatgat 665
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5289 gttcaggaacttcaacgaataggaattttgggatcaattggcttgtactgttcatatgat 5230
Query: 666 tcgaatattggaagaatcatgggttctatcgtagtagatttacctttactaccattgtca 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5229 tcgaatattggaagaatcatgggttctatcgtagtagatttacctttactaccattgtca 5170
Query: 726 ttttttagaatatccttggaatttacattattgttttttttcttcatgagatggggatgc 785
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5169 ttttttagaatatccttggaatttacattattg-tttttttcttcatgagatggggatgc 5111
Query: 786 cgcaatggcaatctttgtgtccagcctttcttcctgcttagtggttgaactatcctggaa 845
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 5110 cgcaatggcaatctttgtgtccagcctttctccctgcttagtggttgacttatcctggaa 5051
Query: 846 atgtctggatattgtggtttgtagttcattatggtcgaaa 885
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 5050 atgtctggatattgtggtttgtagttcagtatggtcgaaa 5011
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8216
Number of Sequences: 1807
Number of extensions: 8216
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 2
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)