BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF08FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 692 0.0
3x_Contig602 151 3e-36
>3x_Contig1020
Length = 4879
Score = 692 bits (349), Expect = 0.0
Identities = 396/408 (97%), Gaps = 3/408 (0%)
Strand = Plus / Plus
Query: 570 tcgtggaatggatgatcccagggttgttgaaggagccaaatgggtcggaccctttgaata 629
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgtggaatggatgatcccagg-ttgttgaaggagccaaatgggtcggaccctttgaata 59
Query: 630 acgaagcagcaacgttgcaactgaaggataaagatatgtatgaacaaaagatacatgaat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 acgaagcagcaacgttgcaactgaaggataaagatatgtatgaacaaaagatacatgaat 119
Query: 690 acatcaacaaatacgctaccaaggaaaaatacatacagcagtttgggaaatggaacagtt 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 acatcaacaaatacgctaccaaggaaaaatacatacagcagtttgggaaatggaacagtt 179
Query: 750 ccgatgatacagatgatgaggatgaggatgcggatatggacgaatcatacgacgangcag 809
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 180 ccgatgatacagatgatgaggatgaggatgcggatatggacgaatcagacgacgagcaag 239
Query: 810 cacatgacgataacgatagtatggaactaagtgatatagaagtcagtgacgacgacgatt 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cacatgacgataacgatagtatggaactaagtgatatagaagtcagtgacgacgacgatt 299
Query: 870 gaaatttg-aagtttaaagtt-atgcttatattcacttcatccatcaaaactagcatata 927
|||||||| ||||| |||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 300 gaaatttgaaagttaaaagttaatgctcatatccacttcatccatcaaaactagcatata 359
Query: 928 ctgcattcactccaactattgatatcctaacctgaacttccaataaaa 975
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 360 ctgcattcactccaactattgatatctaaacctgaacttccaataaaa 407
>3x_Contig602
Length = 2648
Score = 151 bits (76), Expect = 3e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 86 attaattaaagatgaggtatgttcgttgaaatggagttttttcttttttttaagatgctg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2565 attaattaaagatgaggtatgttcgttgaaatggagttttttcttttttttaagatgctg 2624
Query: 146 tgtctcagtatcttttatga 165
|||||||||||| |||||||
Sbjct: 2625 tgtctcagtatcctttatga 2644
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7558
Number of Sequences: 1807
Number of extensions: 7558
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 2
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)