BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF08RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1675 0.0
>3x_Contig1770
Length = 29267
Score = 1675 bits (845), Expect = 0.0
Identities = 865/869 (99%), Gaps = 2/869 (0%)
Strand = Plus / Plus
Query: 49 aacagtgcgagcagagattttaaggtacaatgcgacaatcttttaggtgttagatcgact 108
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 10016 aacagtgcgagcagagatctaaaggtacaatgcgacaatcttttaggtgttagatcgact 10075
Query: 109 aactcggccaattatttcagcaaatttacacactgagccatatacttaacagaaagtgag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10076 aactcggccaattatttcagcaaatttacacactgagccatatacttaacagaaagtgag 10135
Query: 169 aatgtctttgataagtagggcaaatcgtcttggaggtttcacgaccgatgcaaagcattg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10136 aatgtctttgataagtagggcaaatcgtcttggaggtttcacgaccgatgcaaagcattg 10195
Query: 229 ggaatacgaatggtccactactgctaaacaaaatgaaaatggtactgatgagaaggtaaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10196 ggaatacgaatggtccactactgctaaacaaaatgaaaatggtactgatgagaaggtaaa 10255
Query: 289 atataagttcaagcaatgggtaaaaaaagatcatcctttgagagatgtagttgaggatga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10256 atataagttcaagcaatgggtaaaaaaagatcatcctttgagagatgtagttgaggatga 10315
Query: 349 tacagatgttcttaacttagatgaatttgataggacgaagatagctaagaaaaatgctcg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10316 tacagatgttcttaacttagatgaatttgataggacgaagatagctaagaaaaatgctcg 10375
Query: 409 tgtccaggagaaaagtggcccagattcactctcaattaacgatataagaggagctgttgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10376 tgtccaggagaaaagtggcccagattcactctcaattaacgatataagaggagctgttgg 10435
Query: 469 tggttctgacattcctgggttctcaggatcggatgctaagaaagaagccgagagtgaagc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10436 tggttctgacattcctgggttctcaggatcggatgctaagaaagaagccgagagtgaagc 10495
Query: 529 tgctgttgaaactcctgtggttgaaactccagcggaagaaactccggctgaagatacacc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10496 tgctgttgaaactcctgtggttgaaactccagcggaagaaactccggctgaagatacacc 10555
Query: 589 ggcagaggtaaaagaccaagaaggcgacgtaaagatggaatgattcattatataacgatt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10556 ggcagaggtaaaagaccaagaaggcgacgtaaagatggaatgattcattatataacgatt 10615
Query: 649 acacctatatactgtaattttactacgattcatggaatccagaatgtggcctggacgccc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10616 acacctatatactgtaattttactacgattcatggaatccagaatgtggcctggacgccc 10675
Query: 709 actctcgaataagataaagacagtccttcatccaaaggagggcaagcaggaaaaaccatc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10676 actctcgaataagataaagacagtccttcatccaaaggagggcaagcaggaaaaaccatc 10735
Query: 769 accgcttttgttctccacataggacgtatgtgtgcgtttgagacattactatataaaact 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10736 accgcttttgttctccacataggacgtatgtgtgcgtttgagacattactatataaaact 10795
Query: 829 attggcttttcattattcacgttgttggnttttgatagtcataaatgagatggcatcgcg 888
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10796 attggc-tttcattattcacgttgttgg-ttttgatagtcataaatgagatggcatcgcg 10853
Query: 889 agcggttttaatcgaagcctgtatttctg 917
|||||||||||||||||||||||||||||
Sbjct: 10854 agcggttttaatcgaagcctgtatttctg 10882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5789
Number of Sequences: 1807
Number of extensions: 5789
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)