BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF09FM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1631 0.0
>3x_Contig1565
Length = 10922
Score = 1631 bits (823), Expect = 0.0
Identities = 886/904 (98%), Gaps = 3/904 (0%)
Strand = Plus / Plus
Query: 86 ctgtccattaaatctactggaataaaacgctcagtttcagttggaaagaaaaaaaaaaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6116 ctgtccattaaatctactggaataaaacgctcagtttcagttggaaagaaaaaaaaaaga 6175
Query: 146 catattccgaccaatgagagcggttcatataattttgaagaagcgtaatattgagaggga 205
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6176 catattccgaccaatgagagcggttcagataattttgaagaagcgtaatattgagaggga 6235
Query: 206 caacaaactttttatctatccatttcttgttgtgatctttccttacctaaaggaaatttg 265
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6236 caacaaactttttaccaacccatttcttgttgtgatctttccttacctaaaggaaatt-g 6294
Query: 266 caaaaagaaaaaaaagaaccgtcttcgaattccattccggccgatgagcaagtggtattt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295 caaaaagaaaaaaaagaaccgtcttcgaattccattccggccgatgagcaagtggtattt 6354
Query: 326 gggaggtaacgtatcgactagtagtttatgcggttttcctactcaatcctttagaagcag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6355 gggaggtaacgtatcgactagtagtttatgcggttttcctactcaatcctttagaagcag 6414
Query: 386 cgctagaaggcaaggaagcagaagacattttgtctaccttttcacagattccaaacagtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6415 cgctagaaggcaaggaagcagaagacattttgtctaccttttcacagattccaaacagtt 6474
Query: 446 gatattttgggaaggactttccgtaaacattctgaaatctcgcattagatccgtagatag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6475 gatattttgggaaggactttccgtaaacattctgaaatctcgcattagatccgtagatag 6534
Query: 506 cgtcgtagcccaccgtgaacaagccaaaaaagtgcacgcaaaaactacatgtaatccgat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6535 cgtcgtagcccaccgtgaacaagccaaaaaagtgcacgcaaaaactacatgtaatccgat 6594
Query: 566 ggtcctgaaagactttcacaaacacccatataatgggggcgcctgtgaagcagaaaaagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6595 ggtcctgaaagactttcacaaacacccatataatgggggcgcctgtgaagcagaaaaagt 6654
Query: 626 tagtatgatccatttggcgtgcggaaatagtgaccaatcggtaaacttgtggtatttcaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6655 tagtatgatccatttggcgtgcggaaatagtgaccaatcggtaaacttgtggtatttcaa 6714
Query: 686 ctctcagcttccgcggaaaacaatatttgaaggaaagggaagcggtacattgcacagcat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6715 ctctcagcttccgcggaaaacaatatttgaaggaaagggaagcggtacattgcacagcat 6774
Query: 746 gcccagttgggtcaattgggccagttggacccctagacctcgttttgatgaataattgag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6775 gcccagttgggtcaattgggccagttggacccctagacctcgttttgatgaataattgag 6834
Query: 806 gctacagtgctccaatcaccctccgtattctcatcactccgtagacaacgctgcgtcgga 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6835 gctacagtgctccaatcaccctccgtattctcatcactccgtagacaacgctgcgtcgga 6894
Query: 866 aatttangaagctcat-aggttaaaatgactgaaatctacctgccccgactggattgtnn 924
|||||| ||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 6895 aatttaggaagctcataaggttaaattgactgaaatctacctgcccgaactggattgtcc 6954
Query: 925 ctcgtttttgcatgttaatgtggtacacgttaatactttacgatgatttttccggatcat 984
|||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 6955 tcggtttttgcatgtaaatgtggtacacgttaatactttacgatga-ttttcccgatcat 7013
Query: 985 aaca 988
||||
Sbjct: 7014 aaca 7017
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8424
Number of Sequences: 1807
Number of extensions: 8424
Number of successful extensions: 113
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)