BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF09RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1566 0.0
>3x_Contig1761
Length = 23186
Score = 1566 bits (790), Expect = 0.0
Identities = 849/861 (98%), Gaps = 6/861 (0%)
Strand = Plus / Plus
Query: 49 taatcgatgagtgtaattctttaaaatttcatctagatttcattttcctatctctgtgtg 108
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17331 taatcgatgagtgtaat-ctttaaaatttcatctagatttcattttcctatctctgtgtg 17389
Query: 109 aattgtcaatctagtgggtctacttactttacattcttttggttctataatatctgcgct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17390 aattgtcaatctagtgggtctacttactttacattcttttggttctataatatctgcgct 17449
Query: 169 tttttctatttccgtcaaattcgaattataaccattttaactgcaattataattacacaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17450 tttttctatttccgtcaaattcgaattataaccattttaactgcaattataattacacaa 17509
Query: 229 atcttcatacgtgttcccaagatttgatataaagccatttggtattgccatcgctctttt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17510 atcttcatacgtgttcccaagatttgatataaagccatttggtattgccatcgctctttt 17569
Query: 289 ccgcattactcagaattaagataattattctaattcattgacgagaatatacaggaccag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17570 ccgcattactcagaattaagataattattctaattcattgacgagaatatacaggaccag 17629
Query: 349 tttgctccccgaagtttacgaatatttcctatatctgttttgagatgagatatgtgttaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17630 tttgctccccgaagtttacgaatatttcctatatctgttttgagatgagatatgtgttaa 17689
Query: 409 gatccatcgcattaggtcgtgggcttcgcgcaccaagtagaagttttattattggtccaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17690 gatccatcgcattaggtcgtgggcttcgcgcaccaagtagaagttttattattggtccaa 17749
Query: 469 ctcgtcagtttccgctagcagtggctcctcgttattactctcaagaaactccgaaacaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17750 ctcgtcagtttccgctagcagtggctcctcgttattactctcaagaaactccgaaacaaa 17809
Query: 529 aacagccagtacagccacaacaaccgtcaactgcgctacaacatcaacctaaaccagctc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17810 aacagccagtacagccacaacaaccgtcaactgcgctacaacatcaacctaaaccagctc 17869
Query: 589 ttccggttaagaaagaagctgaaccaaagctatcactgtgggctaaagttaaacatgaag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17870 ttccggttaagaaagaagctgaaccaaagctatcactgtgggctaaagttaaacatgaag 17929
Query: 649 ctcagcattattgggatggtaccaaattattaggtctcgaagttaagatcgccatgagat 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17930 ctcagcattattgggatggtaccaaattattaggtctcgaagttaagatcgccatgagat 17989
Query: 709 tggttatgaagatgtcagctggttacgaactaagtcgtagagaaaagatttcattgaaaa 768
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17990 tggttatgaagatgtcagctggttacgaactaagtcgtagagaaaagattcaattgaaaa 18049
Query: 769 gaacttctcaagatatgattagactagtgccattcagtgncttntgtcattgtcccattt 828
||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 18050 gaactactcaagatatgattagactagtgccattcagtg-cttttgtcattgtcccattt 18108
Query: 829 gcttgacttttgttgccaattgccttgaaactttt-ccaaatcttttgcctt-cac-tac 885
||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||
Sbjct: 18109 gctgaacttttgttgccaattgccttgaaacttttcccaaatcttttgccttccacttac 18168
Query: 886 gaatct-agaaagataaacaa 905
|||||| ||||||||||||||
Sbjct: 18169 gaatctaagaaagataaacaa 18189
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7207
Number of Sequences: 1807
Number of extensions: 7207
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)