BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF10FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1692 1578 0.0
>3x_Contig1692
Length = 16448
Score = 1578 bits (796), Expect = 0.0
Identities = 851/864 (98%), Gaps = 5/864 (0%)
Strand = Plus / Plus
Query: 88 caaccaaactttgttaagaagaatctaactactatatccactaaggaacaggagaagaat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6062 caaccaaactttgttaagaagaatctaactactatatccactaaggaacaggagaagaat 6121
Query: 148 aatacactctcgtcgcttaatttttccaaatacaactggggtatttacaaagaatgtacc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6122 aatacactctcgtcgcttaatttttccaaatacaactggggtatttacaaagaatgtacc 6181
Query: 208 cgtttagaggatcacatatcgagatttggaacctatacaggtttcctaaatatgaaggga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6182 cgtttagaggatcacatatcgagatttggaacctatacaggtttcctaaatatgaaggga 6241
Query: 268 aaacttctcactgattcaattatttatccatatcccttcacccttaaaagtattcaagat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6242 aaacttctcactgattcaattatttatccatatcccttcacccttaaaagtattcaagat 6301
Query: 328 aagaaattccctgagtacctcatggaatttgatagccatatagcgcaaaaaatggagcgc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6302 aagaaattccctgagtacctcatggaatttgatagccatatagcgcaaaaaatggagcgc 6361
Query: 388 acattggataatcacaaactactgagcaaagtgaagtttaaacatgtacagaatgaggaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6362 acattggataatcacaaactactgagcaaagtgaagtttaaacatgtacagaatgaggaa 6421
Query: 448 ctacgaacctgggatgcatatatcaccatgcccgaagaatatcaattattagaaaaccta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6422 ctacgaacctgggatgcatatatcaccatgcccgaagaatatcaattattagaaaaccta 6481
Query: 508 ttaaatccaatgcaagagatgaaagatggggaacaggctcttcattttgctaacttcttt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6482 ttaaatccaatgcaagagatgaaagatggggaacaggctcttcattttgctaacttcttt 6541
Query: 568 gcctcgatgttcttccaaggaaatgagcataaattgaaagcggtgtactttgacacccgt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6542 gcctcgatgttcttccaaggaaatgagcataaattgaaagcggtgtactttgacacccgt 6601
Query: 628 ctgatcgatgacatgtatgaaggtaaaatcaagcctatgttccggattgtaacagataat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6602 ctgatcgatgacatgtatgaaggtaaaatcaagcctatgttccggattgtaacagataat 6661
Query: 688 tcggtatctgacattaatgacatatttaattgcacagcatttggcgaaaacccattcg-a 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6662 tcggtatctgacattaatgacatatttaattgcacagcatttggcgaaaacccattcgaa 6721
Query: 747 aaggccaatatatcagctactgagattc-anaagagagatttaaattt-gcctctttgat 804
|||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct: 6722 aaggccaatatatcagctactgagattcaaaaagagagatttaaatttggcctctttgat 6781
Query: 805 gggaaccatgaatacatcccagaaacattattagcattggaagcgaatttcgattatnnt 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6782 gggaaccatgaatacatcccagaaacattattagcattggaagcgaatttcgattatttt 6841
Query: 865 tgagatt-tataaacagcgataagggatgntacgtttgccaagaatt-acagcaagaacc 922
|||| ||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 6842 gaggattctataaacagcgataagggatgttacgttggccaagaattaacagcaagaacc 6901
Query: 923 tttgcgactggagttttgaaaaaa 946
||||||||||||||||||||||||
Sbjct: 6902 tttgcgactggagttttgaaaaaa 6925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6412
Number of Sequences: 1807
Number of extensions: 6412
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)