BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF10RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig294 1556 0.0
>3x_Contig294
Length = 2887
Score = 1556 bits (785), Expect = 0.0
Identities = 851/864 (98%), Gaps = 7/864 (0%)
Strand = Plus / Plus
Query: 37 gcttgtttcc-tgtcttt-acagtttttttttggacggaagttggatca-cattatcggt 93
|||||||||| ||||||| |||| | ||||||||||||||||||||||| ||||||||||
Sbjct: 1219 gcttgtttccatgtctttcacagatattttttggacggaagttggatcaacattatcggt 1278
Query: 94 aacattgctaaaatagtgcgtcaacaagtgcaccttcgttacgagaagtaagaatcttct 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 aacattgctaaaatagtgcgtcaacaagtgcaccttcgttacgagaagtaagaatcttct 1338
Query: 154 gatatcatctaatttcacattatcaagctgtaactctagttcgcttagttgtctgttcaa 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 gatatcatctaatttcacattatcaagctgtaactctagttcgcttagttgtctgttcaa 1398
Query: 214 aacgtgtaataatggtaatttttcctcattggcaacaaggccgctcatattactaggatt 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 aacgtgtaataatggtaatttttcctcattggcaacaaggccgctcatattactaggatt 1458
Query: 274 tgagttcatagtatccacgatttgattctcgaaatgagcaatttgtaacatttgtttgat 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 tgagttcatagtatccacgatttgattctcgaaatgagcaatttgtaacatttgtttgat 1518
Query: 334 ggaaaaaggtatgaaatctgtcgtactactctctactgttgaaatcttgcaggtatttat 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1519 ggaaaaaggtatgaaatctgtcgtactactctctactgttgaaatcttgcaggtatttat 1578
Query: 394 aacggtatggtcaaaagagacatatgcggggaacccaaaggaggcagatattgtttgtga 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 aacggtatggtcaaaagagacatatgcggggaacccaaaggaggcagatattgtttgtga 1638
Query: 454 tacaatattacaacaaatccacgttcgtatctgttcatgaataagttgcgagtttgctga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1639 tacaatattacaacaaatccacgttcgtatctgttcatgaataagttgcgagtttgctga 1698
Query: 514 tgcatattccgtggaaaactgagcactgttgagtcccacgcgcagtgcttggaacattgc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1699 tgcatattccgtggaaaactgagcactgttgagtcccacgcgcagtgcttggaacattgc 1758
Query: 574 agaaccgatagtattccaagatgtgtcggcgcttagcgatgacgttaatggtggccaata 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1759 agaaccgatagtattccaagatgtgtcggcgcttagcgatgacgttaatggtggccaata 1818
Query: 634 cgtgtatattaaaaatgcctgcaccgagtaaacagaagacacgttcaagacaggctcgtc 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1819 cgtgtatattaaaaatgcctgcaccgagtaaacagaagacacgttcaagacaggctcgtc 1878
Query: 694 agattccattggtgtgtacctaataatcggagaaatggtaatttctgccaaaatagattt 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1879 agattccattggtgtgtacctaataatcggagaaatggtaatttctgccaaaatagattt 1938
Query: 754 aaccatattcgaaagtttattcatcatctctatagcttcaaatttacgtctaagccctac 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1939 aaccatattcgaaagtttattcatcatctctatagcttcaaatttacgtctaagccctac 1998
Query: 814 tagtattattacnnccaaagagac-aggagataggctgtatattcttttcaggacctttt 872
||||||||| || | |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 1999 tagtattataac-ccaaaagagacaaggagataggctgtatattc-tttcaggacctttt 2056
Query: 873 gtcacattcacccacaggtaaaaa 896
||||||| || |||||||||||||
Sbjct: 2057 gtcacatcca-ccacaggtaaaaa 2079
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6584
Number of Sequences: 1807
Number of extensions: 6584
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)