BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF11FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1364 1624 0.0
>3x_Contig1364
Length = 7464
Score = 1624 bits (819), Expect = 0.0
Identities = 867/883 (98%), Gaps = 1/883 (0%)
Strand = Plus / Minus
Query: 88 gtggaactggaaaatatggtgtgcacatatcatcgactccgaaaagtgtaccggaattgc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6721 gtggaactggaaaatatggtgtgcacatatcatcgactccgaaaagtgtaccggaattgc 6662
Query: 148 tatgcgaagccgtctaccaagacgttcatggagaaatatctttggcaagtcccgagtctg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6661 tatgcgaagccgtctaccaagacgttcatggagaaatatctttggcaagtcccgagtctg 6602
Query: 208 aatcaattgacatttctaatagtgctggcaggagagtagttatattccaagatttgctca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6601 aatcaattgacatttctaatagtgctggcaggagagtagttatattccaagatttgctca 6542
Query: 268 agaacattggcgttgggaccttattagctcaggtcagcggtggtcctttggaaaaggtgc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6541 agaacattggcgttgggaccttattagctcaggtcagcggtggtcctttggaaaaggtgc 6482
Query: 328 tatacgcttatgacaataagacaggttcccgagatgtcgtttatgttgaattgcatttct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6481 tatacgcttatgacaataagacaggttcccgagatgtcgtttatgttgaattgcatttct 6422
Query: 388 tgttccctgatgatgctgctcagtttatgaaatacgccagattccacctattcaaagtga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6421 tgttccctgatgatgctgctcagtttatgaaatacgccagattccacctattcaaagtga 6362
Query: 448 acggtgtacatttagttccacattggggtgtaatagattctctagactcctctgaaaaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6361 acggtgtacatttagttccacattggggtgtaatagattctctagactcctctgaaaaga 6302
Query: 508 gtcttttagatattcaacagtatgttcatccagatttttgtaaagatattcaaaactttg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6301 gtcttttagatattcaacagtatgttcatccagatttttgtaaagatattcaaaactttg 6242
Query: 568 actcgactggagcacgtcgctgcttaattatgaagaaatattcaaggaaacataagtcga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6241 actcgactggagcacgtcgctgcttaattatgaagaaatattcaaggaaacataagtcga 6182
Query: 628 tttctacagagttgaattcaaagtctcacatttatgatttggatatccaacaaataatcg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6181 tttctacagagttgaattcaaagtctcacatttatgatttggatatccaacaaataatcg 6122
Query: 688 atgattttaatcaattcggacaggttctcgaggtatcaccgttgatttctcggaaaatat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6121 atgattttaatcaattcggacaggttctcgaggtatcaccgttgatttctcggaaaatat 6062
Query: 748 gtttgcagatcagtttccatgatatcagaagtgcaatagaggcaatgaggagttatgaga 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6061 gtttgcagatcagtttccatgatatcagaagtgcaatagaggcaatgaggagttatgaga 6002
Query: 808 cttccaattcctacataaatgggcagtattttaaagactggtccatctggtatggntaag 867
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 6001 cttccaattcctacataaatggcaagtattttaaagactggtccatctggtatggtaaag 5942
Query: 868 acattgtagataaa-catgcattgaagtgtangataagtttaatattctataacttaata 926
|||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 5941 acattgtagataaaccatgcattgaagtgtagataaagtttaatattctataactaaata 5882
Query: 927 gcattntgtacatattttcnttaacacattaaagaaataataa 969
||||| ||||||||| | | | ||||||| |||||||||||||
Sbjct: 5881 gcattttgtacatatatacataaacacataaaagaaataataa 5839
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6665
Number of Sequences: 1807
Number of extensions: 6665
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)