BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZF11RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1403 1610 0.0
>3x_Contig1403
Length = 7711
Score = 1610 bits (812), Expect = 0.0
Identities = 854/863 (98%), Gaps = 4/863 (0%)
Strand = Plus / Plus
Query: 50 ttgatcgatgattcttttatcaatcaaatcagcagcaatggcagcaatgtagatcaagac 109
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 ttgatcgatgattctttcatcaatcaaatcagcagcaatggcagcaatgtagatcaagac 1133
Query: 110 tgggtcgaatctggaagcaaccttttggtccttcaacaattcgtctagaacggatctggt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 tgggtcgaatctggaagcaaccttttggtccttcaacaattcgtctagaacggatctggt 1193
Query: 170 agtagcaatgtcaccagcgtgggaaacttctggcaagacatcgtcggcaccgacgttacc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 agtagcaatgtcaccagcgtgggaaacttctggcaagacatcgtcggcaccgacgttacc 1253
Query: 230 gactcttctcaaggtcttcaaacctctcaaagtaacttcacgagcttctgggtcagcaat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 gactcttctcaaggtcttcaaacctctcaaagtaacttcacgagcttctgggtcagcaat 1313
Query: 290 ggtggcgaagttgttcttcaaacctggcaacaatttttccaagaatggagcaacgacttg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 ggtggcgaagttgttcttcaaacctggcaacaatttttccaagaatggagcaacgacttg 1373
Query: 350 tgggtcttcgaccaacttacacatgttatcaatgataacagcagccttacgcttgatgga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 tgggtcttcgaccaacttacacatgttatcaatgataacagcagccttacgcttgatgga 1433
Query: 410 agtttctctttcagccaaacctctgttcaacaatggaaccatgatggacaaagtagctgg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 agtttctctttcagccaaacctctgttcaacaatggaaccatgatggacaaagtagctgg 1493
Query: 470 ggtaacttcagcaacgaaagtggtggcacccaacaagtggacggtttctggaacttcact 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 ggtaacttcagcaacgaaagtggtggcacccaacaagtggacggtttctggaacttcact 1553
Query: 530 tggatcagcgatacattcgatcaactttggaatgaaacgttcaatatccttgttttcgac 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 tggatcagcgatacattcgatcaactttggaatgaaacgttcaatatccttgttttcgac 1613
Query: 590 ggtttcagtagccttggtgatagtagcggtagcagcttgcttgacttccttcttagtatc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 ggtttcagtagccttggtgatagtagcggtagcagcttgcttgacttccttcttagtatc 1673
Query: 650 ccacatagcttcagacaaagctgggatcaattcaggcattctcaaaccaagttgctcctt 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 ccacatagcttcagacaaagctgggatcaattcaggcattctcaaaccaagttgctcctt 1733
Query: 710 agcagtgtcaaccaaaacggagataacagccaagatagaaaccttttcttgccatttgga 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 agcagtgtcaaccaaaacggagataacagccaagatagaaaccttttcttgccatttgga 1793
Query: 770 agtagaatccaaagcagaagtcaacaatggcaagaaagccttgatggcagctgggttgat 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1794 agtagaatccaaagcagaagtcaacaatggcaagaaagccttgatggcagctgggttgat 1853
Query: 830 ggccttagc-atagcccaacaagcatcgnaag-caaaacttggattt-cttgtccttgtc 886
||||||||| |||||| | |||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 1854 ggccttagcaatagccaacaaagcatcggaagccaaaacttggatttccttgtccttgtc 1913
Query: 887 a-cagccttgtcacagatgcttg 908
| |||||||||||||||||||||
Sbjct: 1914 accagccttgtcacagatgcttg 1936
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6377
Number of Sequences: 1807
Number of extensions: 6377
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)