BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG03RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1542 0.0
>3x_Contig1791
Length = 39945
Score = 1542 bits (778), Expect = 0.0
Identities = 849/865 (98%), Gaps = 7/865 (0%)
Strand = Plus / Minus
Query: 49 gcttcaagagtttaacgtatatatttagtctttcgttttgatatgagaccatttctattc 108
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 20131 gcttcaagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattc 20072
Query: 109 tttttattataccattgacatgatcgattaagtttgatctagtctttgttgataagggta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20071 tttttattataccattgacatgatcgattaagtttgatctagtctttgttgataagggta 20012
Query: 169 ccgtgtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattttgtt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 20011 ccgtgtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgtt 19952
Query: 229 catggttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19951 catggttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaa 19892
Query: 289 atgtattacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19891 atgtattacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaa 19832
Query: 349 tagagtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19831 tagagtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggc 19772
Query: 409 tttgattcacaatggataaaacattggggtcagtattcttgttttccgttaagaataggt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19771 tttgattcacaatggataaaacattggggtcagtattcttgttttccgttaagaataggt 19712
Query: 469 tgttacaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19711 tgttacaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaat 19652
Query: 529 ttgaggtcttagttaattcatctagttcgatctttggatccagccaggacatgctatcaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19651 ttgaggtcttagttaattcatctagttcgatctttggatccagccaggacatgctatcaa 19592
Query: 589 agaaaaataggaaggaagtagtcaatatcgcaaacttagtcttccaatgattctttacca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19591 agaaaaataggaaggaagtagtcaatatcgcaaacttagtcttccaatgattctttacca 19532
Query: 649 catttcctacaagagagaactttcttgtactgactttcatttctatttcccccatcttaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19531 catttcctacaagagagaactttcttgtactgactttcatttctatttcccccatcttaa 19472
Query: 709 gtacttttaaataccccttttgaagatcagaatcttcatccaagatctcaaagtttatat 768
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19471 gtactttcaaataccccttttgaagatcagaatcttcatccaagatctcaaagtttatat 19412
Query: 769 ctttgaatttggagagtaattgggttttgttaaacttcaagtaaccaccttttattttct 828
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 19411 ctttgaatttggagagtaattgggttttgttaaacttcaagtaaccacctttta-tttcc 19353
Query: 829 tttcttaaagataaaagcttctttagcttcggattgtatcaaatttcagtactagttttt 888
|| |||||||||||||||||| |||||| || | |||||| |||||||||||||| ||||
Sbjct: 19352 ttccttaaagataaaagcttc-ttagctccgta-tgtatc-aatttcagtactag-tttt 19297
Query: 889 tagacacttcttgatggctcaaaat 913
|||||||| ||||||||||||||
Sbjct: 19296 tagacact--ctgatggctcaaaat 19274
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9178
Number of Sequences: 1807
Number of extensions: 9178
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)