BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG06FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig661 1118 0.0
3x_Contig203 617 e-176
>3x_Contig661
Length = 2026
Score = 1118 bits (564), Expect = 0.0
Identities = 564/564 (100%)
Strand = Plus / Plus
Query: 85 ttatctcaaggaagacaaaagcatcatgctagcttcaggaataccagtagcgttggttcc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 ttatctcaaggaagacaaaagcatcatgctagcttcaggaataccagtagcgttggttcc 1522
Query: 145 taacaaaaatttgctgtatgattttaaagatgaatccaaaactaaattgcttgcagcagg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 taacaaaaatttgctgtatgattttaaagatgaatccaaaactaaattgcttgcagcagg 1582
Query: 205 aatgaaagaaatttctgttgagggagaaggtatcctaaacattaaaatgaatgacaaaat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1583 aatgaaagaaatttctgttgagggagaaggtatcctaaacattaaaatgaatgacaaaat 1642
Query: 265 cacaataaaaatgcgagcggtgtttgttccgtcagtcaacatggttatgattccattaca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1643 cacaataaaaatgcgagcggtgtttgttccgtcagtcaacatggttatgattccattaca 1702
Query: 325 gtccttttataagaataacctctatgttgctagaaaccataaacatatcgtgaattccct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 gtccttttataagaataacctctatgttgctagaaaccataaacatatcgtgaattccct 1762
Query: 385 agatgatgaaaagttagcgtctatctacataaaagataagttatggcggatctcaagtga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1763 agatgatgaaaagttagcgtctatctacataaaagataagttatggcggatctcaagtga 1822
Query: 445 tcacattcagttaccgaacaaacatcatcatgtaaagaaagtcaagacatccaagaaata 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1823 tcacattcagttaccgaacaaacatcatcatgtaaagaaagtcaagacatccaagaaata 1882
Query: 505 aaagtgacattaagagatttacgcaggtgtattagagaaaccgttaagaaaggcgaaatt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1883 aaagtgacattaagagatttacgcaggtgtattagagaaaccgttaagaaaggcgaaatt 1942
Query: 565 ggggacttatcaatatctgctgatcattggaagggcattgacagttttcaatgttaatca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1943 ggggacttatcaatatctgctgatcattggaagggcattgacagttttcaatgttaatca 2002
Query: 625 tgtgtgaaaggtagaacctcaaga 648
||||||||||||||||||||||||
Sbjct: 2003 tgtgtgaaaggtagaacctcaaga 2026
>3x_Contig203
Length = 982
Score = 617 bits (311), Expect = e-176
Identities = 325/327 (99%), Gaps = 2/327 (0%)
Strand = Plus / Plus
Query: 643 tcaagacattagtaccgggtctgttgagacaaattagaaaaattaatctagtaactacca 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaagacattagtaccgggtctgttgagacaaattagaaaaattaatctagtaactacca 60
Query: 703 atgtgataggatttacttatcaagatgatacataggggatcttaaaacgtgaaacatgaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtgataggatttacttatcaagatgatacataggggatcttaaaacgtgaaacatgaa 120
Query: 763 tggatcacttgtgtagctggctttaacgatcatgaatggacatacatacattatttctgt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggatcacttgtgtagctggctttaacgatcatgaatggacatacatacattatttctgt 180
Query: 823 ttgacgttaatacgtatttatatatacctatgaacgcgtctacatgaactacagagatgg 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgacgttaatacgtatttatatatacctatgaacgcgtctacatgaactacagagatgg 240
Query: 883 ggtgagaggatgactctctactca-tatggtgcagtgttctgt-gaatttgatggagttg 940
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 241 ggtgagaggatgactctctactcagtatggtgcagtgttctgtagaatttgatggagttg 300
Query: 941 gctcgcctcgccttctagtctgctgat 967
|||||||||||||||||||||||||||
Sbjct: 301 gctcgcctcgccttctagtctgctgat 327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6879
Number of Sequences: 1807
Number of extensions: 6879
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)