BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG07FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1562 0.0
>3x_Contig1488
Length = 9807
Score = 1562 bits (788), Expect = 0.0
Identities = 852/868 (98%), Gaps = 5/868 (0%)
Strand = Plus / Plus
Query: 88 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttcaaaaag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5197 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttcaaaaag 5256
Query: 148 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5257 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 5316
Query: 208 tgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaatgctt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5317 tgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaatgctt 5376
Query: 268 tctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaattt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5377 tctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaattt 5436
Query: 328 ttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437 ttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatga 5496
Query: 388 tacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagtt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5497 tacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagtt 5556
Query: 448 aacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaata 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 aacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaata 5616
Query: 508 tgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacggat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 tgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacggat 5676
Query: 568 gaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 gaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcagt 5736
Query: 628 tttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctctgatc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5737 tttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctctgatc 5796
Query: 688 tgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacctccaat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5797 tgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacctccaat 5856
Query: 748 attcttcgaaggtctttttgcacatcgccaagatccg-aatatcaattctagcatgggta 806
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5857 attcttcgaaggtcttttggcacatcgccaagatccgaaatatcaattctagcatgggta 5916
Query: 807 aaatgtctactgactaacttgaaatc-ttacccaattgaacattcacatcgnaaacatta 865
|||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 5917 aaatgtctactgactaacttgaaatcattacccaattgaacatacacatcggaaacatta 5976
Query: 866 cgcttcgtaaactttgcccttgnaccattgcgtcaaaatttgnnatagttgntttagttg 925
||| ||| ||||||||||||| |||||||||||| |||||| ||||||| ||||||||
Sbjct: 5977 cgc-tcggtaactttgcccttggaccattgcgtcagaatttgtaatagttg-tttagttg 6034
Query: 926 gaatccaatattttcgtcacactagttt 953
||| ||||| |||||||||||||||||
Sbjct: 6035 aaat-caatagtttcgtcacactagttt 6061
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6231
Number of Sequences: 1807
Number of extensions: 6231
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)