BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC18ZG07RM1.SCF screened BAC_end
         (927 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1047                                                        1227   0.0  

>3x_Contig1047 
          Length = 4185

 Score = 1227 bits (619), Expect = 0.0
 Identities = 642/650 (98%)
 Strand = Plus / Minus

                                                                       
Query: 49  gaaattgttattgttccattctcgttttctcgatgagatgagctttgtgaaatttttcag 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaaattgttattgttccattctcgttttctcgatgagatgagctttgtgaaatttttcag 698

                                                                       
Query: 109 tgaaaaaaaaaaaaaaaattttttttggtgatgaaaggattagttaattatcgtttagag 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgaaaaaaaaaaaaaaaattttttttggtgatgaaaggattagttaattatcgtttagag 638

                                                                       
Query: 169 tgatgtgatatgaatatataaagaaagccggcttgagatcttgttttctcttctttggat 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgatgtgatatgaatatataaagaaagccggcttgagatcttgttttctcttctttggat 578

                                                                       
Query: 229 atcacttttcggggaatcatttttccggaacttgggcggttaaatcatgtcgaagaagca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atcacttttcggggaatcatttttccggaacttgggcggttaaatcatgtcgaagaagca 518

                                                                       
Query: 289 agggtagatttgggcgggaaagtgccactatggtgggaatttccctggagttatgtcatt 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agggtagatttgggcgggaaagtgccactatggtgggaatttccctggagttatgtcatt 458

                                                                       
Query: 349 gtggttgattcaggggtgtctctccggtgtgggctcgcgttgcccattttncaatgggca 408
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 457 gtggttgattcaggggtgtctctccggtgtgggctcgcgttgcccatttttcaatgggca 398

                                                                       
Query: 409 acgcgatataagtgcttgagtttgttcctccctttttgaggtgcatcattcatatggaat 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acgcgatataagtgcttgagtttgttcctccctttttgaggtgcatcattcatatggaat 338

                                                                       
Query: 469 tgctcaccaagtgtgtaaacgtttggttactgatacgatgaaaggggcccgtactcgatt 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgctcaccaagtgtgtaaacgtttggttactgatacgatgaaaggggcccgtactcgatt 278

                                                                       
Query: 529 agtacgggatatgctctctattgtcgactttttgaaatcgccagcatttgaaatattcac 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agtacgggatatgctctctattgtcgactttttgaaatcgccagcatttgaaatattcac 218

                                                                       
Query: 589 ggaattcatactgtactgtatttttttctgctgaaattgaaactgctgctttattaactg 648
           |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 217 ggaattcatactgtactgtatttttttctgttgaaattgaaactgctgttttatcaactg 158

                                                             
Query: 649 gaaaccttctcattttaccaccgtttgaccgttcattattcaaccttatt 698
           ||||||| |||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 157 gaaacctcctcaattgaccaccgtttgaccgttcattatccaaccttatt 108


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,560
Number of Sequences: 1807
Number of extensions: 25560
Number of successful extensions: 2709
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)