BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG08FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig150 1015 0.0
3x_Contig945 289 5e-78
>3x_Contig150
Length = 1017
Score = 1015 bits (512), Expect = 0.0
Identities = 521/524 (99%)
Strand = Plus / Plus
Query: 86 tcagatgatgctttgataacagttttaaatcgcttggtcaactttgatccaatcgacatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcagatgatgctttgataacagttttaaatcgcttggtcaactttgatccaatcgacatt 553
Query: 146 agagatggcaaaaaagtaatgacagtcacagatgttgcacgcagtatccatataatcaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agagatggcaaaaaagtaatgacagtcacagatgttgcacgcagtatccatataatcaat 613
Query: 206 ctcattagagataaacccaagatcagtcatgaagtttggaacaaattaattgaaaacatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctcattagagataaacccaagatcagtcatgaagtttggaacaaattaattgaaaacatt 673
Query: 266 attctctcaaatacttctgtcgtattacctaaggtatttgaaatcatcccattgcaactc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 attctctcaaatacttctgtcgtattacctaaggtatttgaaatcatcccattgcaactc 733
Query: 326 gatattccggaaacatcggaagaactgacgcacctacaattatacgttttactccatttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gatattccggaaacatcggaagaactgacgcacctacaattatacgttttactccatttg 793
Query: 386 aaaaacctgagagatttgtttgaaacagagcagaatacgtttattagacttttttctctt 445
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aaaaacctcacacatttgtttgaaacagagcagaatacgtttattagacttttttctctt 853
Query: 446 gtcggaacacatgataccgttcccattactgaaaaagaagcacaggcttatgaatcgttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gtcggaacacatgataccgttcccattactgaaaaagaagcacaggcttatgaatcgttt 913
Query: 506 gtcaaagatttcaatgctattggagaaaatttgggactcgagagcagtgatttagtggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gtcaaagatttcaatgctattggagaaaatttgggactcgagagcagtgatttagtggcc 973
Query: 566 tcaaaaattggtacgggatcgacgtttgaagaaatgctttcttt 609
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 tcaaaaattggtacgggatcgacgtttgaagaaatgctttcttt 1017
>3x_Contig945
Length = 3379
Score = 289 bits (146), Expect = 5e-78
Identities = 190/202 (94%), Gaps = 3/202 (1%)
Strand = Plus / Plus
Query: 744 atgctgatgaattaatgtatgagttnattttgtcgttcgcatatcaaagctttgcccatt 803
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 23 atgctgatgaattaatgtatgagttatttttgtcgttcgcatatcaaagctttgcccatt 82
Query: 804 ctaacgataaattcttacaag-tgccgagtctttgatacctncagactcatgcgatgagc 862
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 83 ctaacgataaattcttacaagttgccgagtctttgatacctccagactcatgcgatgagc 142
Query: 863 ataaaactcatgnntctacgctg-ttgatattagtaaactcgaaattcaatgtagaccgt 921
|| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 143 at-aaactcaatgttctacgctgtttgatattagtaaactcgaaattcaatgtagaccgt 201
Query: 922 tatttggatatctttaacaaaa 943
||||||||||||||||||||
Sbjct: 202 agtttggatatctttaacaaaa 223
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7013
Number of Sequences: 1807
Number of extensions: 7013
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)