BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG08RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1692 1659 0.0
>3x_Contig1692
Length = 16448
Score = 1659 bits (837), Expect = 0.0
Identities = 870/877 (99%), Gaps = 3/877 (0%)
Strand = Plus / Plus
Query: 48 aatcatcccgtacttcatctcaagcttcttcacctcattcgaagacaagaacccaatagg 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 aatcatcccgtacttcatcccaagcttcttcacctcattcgaagacaagaacccaatagg 1206
Query: 108 gtccaaaaattgttcctcagaaggccttagtgtgggtatttcctgcatggcgctttcccc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 gtccaaaaattgttcctcagaaggccttagtgtgggtatttcctgcatggcgctttcccc 1266
Query: 168 attcgaaatcaatctacactgaaatgtgtccaaagtgtgtactctaaatagcaaacctct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 attcgaaatcaatctacactgaaatgtgtccaaagtgtgtactctaaatagcaaacctct 1326
Query: 228 tatcaatgataagaccgtatgtactgctgtcaacctttccttgtgatgagctagcgaaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 tatcaatgataagaccgtatgtactgctgtcaacctttccttgtgatgagctagcgaaat 1386
Query: 288 gctaatgttcagtcacgggtttcgaattcctactggcaacagtgtgtcactttaagtgaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 gctaatgttcagtcacgggtttcgaattcctactggcaacagtgtgtcactttaagtgaa 1446
Query: 348 aaaccaaaaaaaaaaagtttgaaaaatttggcaaaaaagagcagtagtgattgcaaagaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 aaaccaaaaaaaaaaagtttgaaaaatttggcaaaaaagagcagtagtgattgcaaagaa 1506
Query: 408 acagctattcaacaatccagctagattatacctatctattccgtgctcaatgtgcctttc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 acagctattcaacaatccagctagattatacctatctattccgtgctcaatgtgcctttc 1566
Query: 468 gcagacctctcactataatgatatgacaacctcaatgactgccttttgtttcgctaagtg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 gcagacctctcactataatgatatgacaacctcaatgactgccttttgtttcgctaagtg 1626
Query: 528 tatcctttaaggtcatgaggggacaatatgatagcatgccaatatgtatgtaagtttgaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1627 tatcctttaaggtcatgaggggacaatatgatagcatgccaatatgtatgtaagtttgaa 1686
Query: 588 aaattgatcaacatggattgctttttcaaacgggctcaaattggataaatgatcagatgc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 aaattgatcaacatggattgctttttcaaacgggctcaaattggataaatgatcagatgc 1746
Query: 648 gataagtgaacatatacatatatataaggggattgcgtcgttggaagaagtgattttcag 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 gataagtgaacatatacatatatataaggggattgcgtcgttggaagaagtgattttcag 1806
Query: 708 tttgtatcacttgtagcttggatcggtacaatacagacagatagcaggataaacaaagca 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 tttgtatcacttgtagcttggatcggtacaatacagacagatagcaggataaacaaagca 1866
Query: 768 cagaaatgagtcgttacactttagctattgtgggatgtggtgttatgggccaagcattgt 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1867 cagaaatgagtcgttacactttagctattgtgggatgtggtgttatgggccaagcattgt 1926
Query: 828 tgagtgctatttacaatgcaccaaaagccagcgatgaagctcttcaatactattcaangc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 1927 tgagtgctatttacaatgcaccaaaagccagcgatgaagctcttcaatactatccaa-gc 1985
Query: 888 agaatcatctgcttgcaatgacgtttccagccagcgc 924
| |||||| ||||||||||||| |||||||||||||
Sbjct: 1986 aagatcatc-gcttgcaatgacg-ttccagccagcgc 2020
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,809
Number of Sequences: 1807
Number of extensions: 11809
Number of successful extensions: 160
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)