BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG09RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig222 1582 0.0
>3x_Contig222
Length = 992
Score = 1582 bits (798), Expect = 0.0
Identities = 879/898 (97%), Gaps = 6/898 (0%)
Strand = Plus / Minus
Query: 41 gcttaatccgtataacaatcctactcgttgatgatctttaaaatatctattgctattcag 100
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 898 gcttaatccgtataacaatcctactctttgatgatctttaaaatatctattgctattcag 839
Query: 101 ttattggaaaatatttccagtaaaaagattatgataactttgaatatcagattgacaata 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ttattggaaaatatttccagtaaaaagattatgataactttgaatatcagattgacaata 779
Query: 161 acagtatcagattatcacagcaaaattgatacttttccaggcatgtatgttcctatcaat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acagtatcagattatcacagcaaaattgatacttttccaggcatgtatgttcctatcaat 719
Query: 221 ggcaaaacctataataatttcagagttatatagctttcattcgttacatttttgaacttt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggcaaaacctataataatttcagagttatatagctttcattcgttacatttttgaacttt 659
Query: 281 ttttttttcatttttttggtttaagaaccacagacgtatgtaatgtataggcctatgggt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttttttttcatttttttggtttaagaaccacagacgtatgtaatgtataggcctatgggt 599
Query: 341 ttgggttcactggtaaagaagattacgagagttaacaacaaaactatataagaaagatga 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgggttcactggtaaagaagattacgagagttaacaacaaaactatataagaaagatga 539
Query: 401 ggatgtactacttggattaatttacttgacagtaagcgttaaggtccgttcctctttgta 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggatgtactacttggattaatttacttgacagtaagcgttaaggtccgttcctctttgta 479
Query: 461 cacactaaagaatcataaggcaacgataatttctatatatctaataataatgcatggaca 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cacactaaagaatcataaggcaacgataatttctatatatctaataataatgcatggaca 419
Query: 521 tgatggacagatctagaaatctaggggacaaaaaaaataataacggtttatatcattata 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgatggacagatctagaaatctaggggacaaaaaaaataataacggtttatatcattata 359
Query: 581 tataggaagttaataatgggtcatcatcacatgtagaatcagacaatttcggatggaaga 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tataggaagttaataatgggtcatcatcacatgtagaatcagacaatttcggatggaaga 299
Query: 641 aaaatgtctagtgttggaacaattaatattttttttgttttaatgaactcattgctcttg 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aaaatgtctagtgttggaacaattaatattttttttgttttaatgaactcattgctcttg 239
Query: 701 ttgctgaggttgctgttgatcatgctgctgaggggcattttcaaactgttgctgttgttc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttgctgaggttgctgttgatcatgctgctgaggggcattttcaaactgttgctgttgttc 179
Query: 761 ttctagtggaagttgac-caggaattggacccatttgttgttgtggacgaatgaaagttg 819
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttctagtggaagttgacacaggaattggacccatttgttgttgtggacgaatgaaagttg 119
Query: 820 gttttttctta-cccaaccggttcttaagtttctttcctggaatggg-aatttgttagag 877
|||||| |||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||
Sbjct: 118 gtttttccttaccccaaccggttctcaagtttcttccttggaatgggaaatttgttagag 59
Query: 878 ccac-atacac-acgccacttgttcatgaatatcattattga-gaaaccacaaccctt 932
| || ||| || |||| ||||||||||| |||||| |||| ||||| |||||||||
Sbjct: 58 cgacaatagacaacgcagcttgttcatgagtatcatatttgatgaaacaacaaccctt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,802
Number of Sequences: 1807
Number of extensions: 15802
Number of successful extensions: 205
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)