BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG10FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1655 0.0
>3x_Contig1789
Length = 30977
Score = 1655 bits (835), Expect = 0.0
Identities = 856/862 (99%), Gaps = 1/862 (0%)
Strand = Plus / Minus
Query: 86 tgtgttggataaatccaaagaattgaaaacatctgaagagactctgtgagaatagaacaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24334 tgtgttggataaatccaaagaattgaaaacatctgaagagactctgtgagaatagaacaa 24275
Query: 146 tttcaaaaggtaagatagctggttcttggaaagcgtccgacaatttttcgatgggttcag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24274 tttcaaaaggtaagatagctggttcttggaaagcgtccgacaatttttcgatgggttcag 24215
Query: 206 atggcataatttattgaacccaacgaacattttctcatctttcaaatcgctttgcaaaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24214 atggcataatttattgaacccaacgaacattttctcatctttcaaatcgctttgcaaaat 24155
Query: 266 cgtgacgagcgaattcaaagagaaataagtgcctgaagatttcccaaacggactacactg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24154 cgtgacgagcgaattcaaagagaaataagtgcctgaagatttcccaaacggactacactg 24095
Query: 326 gtaaaatgggaaccaacgaaattcgttccaattcaaagccaaatcatttttcataataaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24094 gtaaaatgggaaccaacgaaattcgttccaattcaaagccaaatcatttttcataataaa 24035
Query: 386 ttcatcgttaacgcatttttgtaagaacgaaatagtggacttaaactgatcgacgttcaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24034 ttcatcgttaacgcatttttgtaagaacgaaatagtggacttaaactgatcgacgttcaa 23975
Query: 446 atacagctcatcaaaactcaggaacttattcccataattgatatatttcacacgttgatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23974 atacagctcatcaaaactcaggaacttattcccataattgatatatttcacacgttgatc 23915
Query: 506 atcgatattcgaagtttgtcgggcccgtatccttgccacatcaaacttcctgaaaaactc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23914 atcgatattcgaagtttgtcgggcccgtatccttgccacatcaaacttcctgaaaaactc 23855
Query: 566 atataatacaatcaaatggtagttgttgaactccaagatgttgttgaaatggaaccaatc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23854 atataatacaatcaaatggtagttgttgaactccaagatgttgttgaaatggaaccaatc 23795
Query: 626 gttgatggttaaatatcctttattctgttcatccatggcgaaaaagatacatccaaatac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23794 gttgatggttaaatatcctttattctgttcatccatggcgaaaaagatacatccaaatac 23735
Query: 686 attcttcgggatctgattcanattgaacgagtgatcagtaaacttcgagtacaacgactg 745
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 23734 attcttcgggatctgattcaaattgaacgagtgatcagtaaacttcgagtacaacgactg 23675
Query: 746 cgagttcgatataagcctgatgaaatcatcgtaccttaacaccgactcaccagtctcttc 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 23674 cgagttcgatataagcctgatgaaatcatcgtaccttaacaccgactcaccagtctctcc 23615
Query: 806 ggagtccgaaacatcgctagcatacgngttcttccagctttttctgctcagcagtaagca 865
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 23614 ggagtccgaaacatcgctagcatacg-gttctcccagctttttctgctcagcagtaagca 23556
Query: 866 cactggcatatttgctaaacacctccagctgctgcttctttttctcgctattcggattca 925
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 23555 cactggcatatttgctaaacacctccagctgctgcttctttttctcgctattcgaattca 23496
Query: 926 ctaggtccatctttgcatgttg 947
|||| |||||||||||||||||
Sbjct: 23495 ctagttccatctttgcatgttg 23474
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7325
Number of Sequences: 1807
Number of extensions: 7325
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)