BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG11FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1689 1566 0.0
>3x_Contig1689
Length = 13711
Score = 1566 bits (790), Expect = 0.0
Identities = 797/798 (99%), Gaps = 1/798 (0%)
Strand = Plus / Plus
Query: 87 ttacgaagtttggcgagtctatcatcaaatactttattcgccggccctagttgctgaata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12907 ttacgaagtttggcgagtctatcatcaaatactttattcgccggccctagttgctgaata 12966
Query: 147 tccagaaagatctctttgggataacctttgcgaaggcaataagaatcattcttcagaata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12967 tccagaaagatctctttgggataacctttgcgaaggcaataagaatcattcttcagaata 13026
Query: 207 tacttattatggttgctttgactttctacagttgattggaactccttttcaatgctacac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13027 tacttattatggttgctttgactttctacagttgattggaactccttttcaatgctacac 13086
Query: 267 cttcgaagcaatgcttcatcagcttgtttttcttttactgccttatcatagaacgctttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13087 cttcgaagcaatgcttcatcagcttgtttttcttttactgccttatcatagaacgctttt 13146
Query: 327 agtttaatcacctcttcctgcgggttataatcatcacagtaagtgttcttcatattacct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13147 agtttaatcacctcttcctgcgggttataatcatcacagtaagtgttcttcatattacct 13206
Query: 387 aataatattaaaactaatcagcagtattacttcattgacagcggatattttagatctgcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13207 aataatattaaaactaatcagcagtattacttcattgacagcggatattttagatctgcc 13266
Query: 447 agctattttttgtctataaactttatagctgttctttcctttacttgttaaaggttcatc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13267 agctattttttgtctataaactttatagctgttctttcctttacttgttaaaggttcatc 13326
Query: 507 ctgtgtcaacaattttgttatcgattatggtttacaaagaaaatcatgtaaattcgtaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13327 ctgtgtcaacaattttgttatcgattatggtttacaaagaaaatcatgtaaattcgtaaa 13386
Query: 567 gagttaaagaataacgcggctgttgggtaataggagtccctatcttcttctcgaatgtgc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13387 gagttaaagaataacgcggctgttgggtaataggagtccctatcttcttctcgaatgtgc 13446
Query: 627 agtcagaatgattgttcgatgtatatatgcagaacttagaaactagtctatctgataaat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13447 agtcagaatgattgttcgatgtatatatgcagaacttagaaactagtctatctgataaat 13506
Query: 687 ataaggggtgtttatttaatatttaataaccagtccatacgctctaggtgaagatttgtc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13507 ataaggggtgtttatttaatatttaataaccagtccatacgctctaggtgaagatttgtc 13566
Query: 747 gtatacctgctcaaccggtatatactcgacatgagtatattcaggaacagcataatcttt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13567 gtatacctgctcaaccggtatatactcgacatgagtatattcaggaacagcataatcttt 13626
Query: 807 actgaagaataaagtgatttgagcgtttttgcattcagagagcgtgaggatcaactgctc 866
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13627 actgaagaataaagtgatttgagcgtttttgcattcagagagcgtgaggatc-actgctc 13685
Query: 867 atgagagtccaaaacaag 884
||||||||||||||||||
Sbjct: 13686 atgagagtccaaaacaag 13703
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6526
Number of Sequences: 1807
Number of extensions: 6526
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)