BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG12FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig532 1530 0.0
>3x_Contig532
Length = 2251
Score = 1530 bits (772), Expect = 0.0
Identities = 856/876 (97%), Gaps = 7/876 (0%)
Strand = Plus / Plus
Query: 87 cgtgcatccgggaaggtgaaagagggtaccccagcaagagaaacatcacacacaagtgtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cgtgcatccgggaaggtgaaagagggtaccccagcaagagaaacatcacacacaagtgtc 847
Query: 147 actggaagaaatacccttggaatagacattccgcaacaattatccgtcaacccatccaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 actggaagaaatacccttggaatagacattccgcaacaattatccgtcaacccatccaaa 907
Query: 207 aatgcagtagaattctttgacaagagaaatcacaacatcccggcaacaagcaatatctca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 aatgcagtagaattctttgacaagagaaatcacaacatcccggcaacaagcaatatctca 967
Query: 267 tctacgaactggctctatcatcatgctgctgcatgcagtagattcaacagtgatcttttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 tctacgaactggctctatcatcatgctgctgcatgcagtagattcaacagtgatcttttc 1027
Query: 327 tacgatagagaacgcattcttctcatcgaaaacctcggactaagagatacgtacacgaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 tacgatagagaacgcattcttctcatcgaaaacctcggactaagagatacgtacacgaac 1087
Query: 387 gtcttacatataccacaatccacacaatcgacgagagtgatatcagtgaagaaagtgaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 gtcttacatataccacaatccacacaatcgacgagagtgatatcagtgaagaaagtgaaa 1147
Query: 447 ggaaacacaagccaagttatgtacgaaacaagaatcaaagctcttgacctagcaagacct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 ggaaacacaagccaagttatgtacgaaacaagaatcaaagctcttgacctagcaagacct 1207
Query: 507 tgcaccggtctttctgacgtccctacatcgatgtacgaagacatcttggacgaagatata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 tgcaccggtctttctgacgtccctacatcgatgtacgaagacatcttggacgaagatata 1267
Query: 567 gtcgctgctatagaagaacaaaagagattcgaaacaagcctataacatagctgaactgac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 gtcgctgctatagaagaacaaaagagattcgaaacaagcctataacatagctgaactgac 1327
Query: 627 ctcccatgtatacgtgtatatctcaacatacgtaataagagtgtattatactaagtggcc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 ctcccatgtatacgtgtatatctcaacatacgtaataagagtgtattatactaagtggcc 1387
Query: 687 gggtaacgatatgtccttgctctaccaaaaatgaatttgggcttttcaaccagaacaacc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 gggtaacgatatgtccttgctctaccaaaaatgaatttgggcttttcaaccagaacaacc 1447
Query: 747 ccataaggtgaacagacaaggccatttgccaccgataaaaggagcgttagcagttacatt 806
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1448 ccataaggtgaacagacaaggccatttgccaccgataaaaggagcgtta-cagttacatt 1506
Query: 807 tgcaatctacagtggttgcattgtgaa-ttaagaccctatagtagtgtaaatagnccagg 865
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 1507 tgcaatctacagtggttgcattgtgaatttaagaccctatagtagtgtaaaatagccagg 1566
Query: 866 tgtttgttg-aacggctgnnttttgtctcgtttgttttcggtgttaac-aagatttt-ca 922
||||||||| |||||||| |||||||||| || ||||||||||||| |||||||| ||
Sbjct: 1567 tgtttgttgaaacggctg-tttttgtctcggtttgtttcggtgttaacaaagattttcca 1625
Query: 923 ctggtttntaatncg-aaagtcttgttagttaaacg 957
||||||| ||| || |||||| |||||| ||||||
Sbjct: 1626 ctggttttaaattcgaaaagtcctgttaggtaaacg 1661
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5533
Number of Sequences: 1807
Number of extensions: 5533
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)