BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZG12RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1314 1277 0.0
>3x_Contig1314
Length = 6289
Score = 1277 bits (644), Expect = 0.0
Identities = 769/796 (96%), Gaps = 11/796 (1%)
Strand = Plus / Plus
Query: 64 ggaaacagatatgctgtcatgactttcggcagcctctgtatgcattaattttatgttgga 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2649 ggaaacagatatgctgtcatgaatttcggcagcctctgtatgcattaattttatgttgga 2708
Query: 124 atatttcgttgtccattggagcatagtattcttcagagaactcatatcggagctctgttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2709 atatttcgttgtccattggagcatagtattcttcagagaactcatatcggagctctgttc 2768
Query: 184 tgcgatagatgcacattcaactgtgttttttcgagagcgtttcatccatgctgaaaggaa 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2769 tgcgatagatgcacattcaactgtgtagaagcgagagcgtttcatccatgctgaaaggaa 2828
Query: 244 tttttggttattttgtaaagatcttctatcttcaaacttgtccagcaacatttcaagatt 303
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2829 tttttggttaaattgtaaagatcttctatcttcaaacttgtccagcaacatttcaagatt 2888
Query: 304 aagtagccttttagattccagccgggtcttccaaactttccacaaattttcaacgagcat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2889 aagtagccttttagattccagccgggtcttccaaactttccacaaattttcaacgagcat 2948
Query: 364 tttactgttacctttagagagttcaatcgacaaacgagttttcatacgagtatcgttaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2949 tttactgttacctttagagagttcaatcgacaaacgagttttcatacgagtatcgttaat 3008
Query: 424 tgaacgcttgataatggtaataaagcgcagcttcatgaaaacttctgctttcctttgtga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3009 tgaacgcttgataatggtaataaagcgcagcttcatgaaaacttctgctttcctttgtga 3068
Query: 484 tgaaagcaatagtttataacgattaatccaaaccataaaatgcctcttactgatatcatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3069 tgaaagcaatagtttataacgattaatccaaaccataaaatgcctcttactgatatcatt 3128
Query: 544 atcataacatcgagctgaaagattcccaagatctttcagagaatgctgtttatttttaac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3129 atcataacatcgagctgaaagattcccaagatctttcagagaatgctgtttatttttaac 3188
Query: 604 aacattgtaatatctcttaaggattaaagaatcaaattcctgagcaagggcgttcagctc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3189 aacattgtaatatctcttaaggattaaagaatcaaattcctgagcaagggcgttcagctc 3248
Query: 664 aaatttcttacgccaaagtttcaaagctttcgagtatttgggcttcctttatttgaaaag 723
||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||
Sbjct: 3249 aaatttcttacgccaaagtttcaaagctttcgagtattt-ggcttctttta-ttgaagag 3306
Query: 724 ttgaaatgggcttgctctgcattttcaatgtgaatggaatgaatgaatttttttcttcaa 783
||||| ||||| ||||||||| |||||||||| |||||||| ||||| ||||||||||||
Sbjct: 3307 ttgaattgggc-tgctctgca-tttcaatgtg-atggaatggatgaa-ttttttcttcaa 3362
Query: 784 aagttgaggtgtaatgaagaattcgctggttgcgtaaccttcccgattttaattttcctt 843
||| |||||||||||| |||||||||| ||||||||| ||| |||||||| | ||||| |
Sbjct: 3363 aag-tgaggtgtaatg-agaattcgct-gttgcgtaa-ctttccgatttt-agtttccat 3417
Query: 844 tgaaaaaagtaaaagc 859
||| ||||||||||||
Sbjct: 3418 tgagaaaagtaaaagc 3433
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9641
Number of Sequences: 1807
Number of extensions: 9641
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)