BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH03FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1715 1643 0.0
>3x_Contig1715
Length = 16241
Score = 1643 bits (829), Expect = 0.0
Identities = 867/880 (98%), Gaps = 1/880 (0%)
Strand = Plus / Minus
Query: 87 cctatttctttcaattaaaggtttaaacagtaaggaatatcaatagttagtgttcagtgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15946 cctatttctttcaattaaaggtttaaacagtaaggaatatcaatagttagtgttcagtgt 15887
Query: 147 agcattgcagtcaattgattatccaccaaagtttttagtacatcgaataatagaaaagca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15886 agcattgcagtcaattgattatccaccaaagtttttagtacatcgaataatagaaaagca 15827
Query: 207 tgccatctccaagctattaccgttctcaattgcttaataacgtagccctaggatatggtt 266
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15826 tgccatctccaagcgactaccgttctcaattgcttaataacgtagccctaggatatggtt 15767
Query: 267 tgatgagtttcacctggagagcagaacctattgccccagaagctgcgtccaaaaccttca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15766 tgatgagtttcacctggagagcagaacctattgccccagaagctgcgtccaaaaccttca 15707
Query: 327 agaaagttcttgaatttactggtgataaaaaggcgttgttcaatgttggtgaattctacg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15706 agaaagttcttgaatttactggtgataaaaaggcgttgttcaatgttggtgaattctacg 15647
Query: 387 gtgaacctttgagcaactacaagttgttgcaatcctactttgacaagtatccggaagatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15646 gtgaacctttgagcaactacaagttgttgcaatcctactttgacaagtatccggaagatc 15587
Query: 447 gtgaaaaggtaattatcagtgctaaaggtgctgttgacttgcaaaccttgagcccagccg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15586 gtgaaaaggtaattatcagtgctaaaggtgctgttgacttgcaaaccttgagcccagccg 15527
Query: 507 gtgatgctaagagtgttagcgcatctatcgaaaacactcttaaagtgttcaatgggtatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15526 gtgatgctaagagtgttagcgcatctatcgaaaacactcttaaagtgttcaatgggtatg 15467
Query: 567 tggacatctatgagccagcaagattggaccttgaacttataaagaagactggtgaatcgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15466 tggacatctatgagccagcaagattggaccttgaacttataaagaagactggtgaatcgg 15407
Query: 627 ttttccctcgtgaaacatttgacaccatcgttgaatacgtcaagaagggtaaaattggtg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15406 ttttccctcgtgaaacatttgacaccatcgttgaatacgtcaagaagggtaaaattggtg 15347
Query: 687 gtatttcattgagtgaagtaaccgctgaacaaatcagagccattcacaaggagtatggtg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15346 gtatttcattgagtgaagtaaccgctgaacaaatcagagccattcacaaggagtatggtg 15287
Query: 747 aatatttagtctgtgttgaagtcgaattgtccatgttttctgctgaaattctctcgaacg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15286 aatatttagtctgtgttgaagtcgaattgtccatgttttctgctgaaattctctcgaacg 15227
Query: 807 gtattgtcgacacttgtaacgaactanggttgccaattgntgcctactcttcattgngta 866
|||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |||
Sbjct: 15226 gtattgtcgacacttgtaacgaactagggttgccaattgttgcctactctccattgggta 15167
Query: 867 gagggttgctaactggtgcttttggccaaaagctctgatatcccagcaggtgatttcaga 926
|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 15166 gaggtttgctaactggtgc-tttggccaagagctctgatatcccagcaggtgatttcaga 15108
Query: 927 attcatttgnanagatttcaagatgacgcgttcgctcaca 966
||||| ||| | ||||| ||||||||||||||||||||||
Sbjct: 15107 attcaattgaagagattccaagatgacgcgttcgctcaca 15068
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6040
Number of Sequences: 1807
Number of extensions: 6040
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)