BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH03RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1560 0.0
>3x_Contig675
Length = 2979
Score = 1560 bits (787), Expect = 0.0
Identities = 857/874 (98%), Gaps = 5/874 (0%)
Strand = Plus / Minus
Query: 51 acaatgtattaaggtttttctttgtagtatttcgggcttcagcaaacgcttttttcatca 110
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 acaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttttcatca 1607
Query: 111 gaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatcaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 gaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatcaa 1547
Query: 171 taccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgttc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 taccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgttc 1487
Query: 231 cgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaacaac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 cgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaacaac 1427
Query: 291 aagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaataaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 aagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaataaa 1367
Query: 351 aaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaagg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 aaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaagg 1307
Query: 411 gtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttttttttc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 gtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttttttttc 1247
Query: 471 tttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaacgtacga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 tttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaacgtacga 1187
Query: 531 ctcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaattagccccaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 ctcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaattagccccaa 1127
Query: 591 ggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcacacacagaa 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 ggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcacacacagaa 1067
Query: 651 acttacagctgagagaaagaaaggaaacagtagaaaaaaagaaaaagcaatgatgaagta 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 acttacagctgagagaaagaaaggaaacagtagaaaaaaagaaaaagcaatgatgaagta 1007
Query: 711 agcctgattaacatggtggtgcgagcgccaatgctttgcatactttacctgcctctgttc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 agcctgattaacatggtggtgcgagcgccaatgctttgcatactttacctgcctctgttc 947
Query: 771 cactgaaaatccaacaga-aagtgtttgcagcagattacacgaacacagacatcagtttt 829
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 946 cactgaaaatccaacagagaagtgtttgcagcagataacacgaacacagacatcag-ttt 888
Query: 830 tttttttcccggtcagggttgaatttatcggcctccctccacttggttttatcaccccct 889
|||||| ||||||||||| |||||| ||| |||||||||||||| || |||||| |||||
Sbjct: 887 ttttttccccggtcaggg-tgaattcatc-gcctccctccacttcgtattatca-cccct 831
Query: 890 ccgatttttgattcgtaatanaagaaggcaagaa 923
| |||||||||||||||| |||||||||||||
Sbjct: 830 cgagtttttgattcgtaatagaagaaggcaagaa 797
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,155
Number of Sequences: 1807
Number of extensions: 21155
Number of successful extensions: 235
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)