BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH04FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1756 1546 0.0
>3x_Contig1756
Length = 16846
Score = 1546 bits (780), Expect = 0.0
Identities = 857/876 (97%), Gaps = 6/876 (0%)
Strand = Plus / Plus
Query: 86 cgatgacaatttggctttggaaaaattcaggtccactcatactttgaagccactaattgc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 cgatgacaatttggctttggaaaaattcaggtccactcatactttgaagccactaattgc 1376
Query: 146 tatcaatatgactgaaacaggtaagctatccagggtgctaaataatattttgacacctgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 tatcaatatgactgaaacaggtaagctatccagggtgctaaataatattttgacacctgt 1436
Query: 206 tacctccaagttactaccatccgccgctgcccctggtcaattgacactagctgaaatcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 tacctccaagttactaccatccgccgctgcccctggtcaattgacactagctgaaatcaa 1496
Query: 266 ccaattgtatcaccaaatcggtggattaccagccaagaagttctttgttattggttctcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 ccaattgtatcaccaaatcggtggattaccagccaagaagttctttgttattggttctcc 1556
Query: 326 aattggacattccagatctccgatcttgcacaacactgggtatgagctactaggcttacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 aattggacattccagatctccgatcttgcacaacactgggtatgagctactaggcttacc 1616
Query: 386 tcatcattttgataaattcgaaactgaagatatcgaagtagttaagaaagaacttttgac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 tcatcattttgataaattcgaaactgaagatatcgaagtagttaagaaagaacttttgac 1676
Query: 446 cagagaagatctcggtggcttagctgtaaccatcccattaaaactagatattattgatag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 cagagaagatctcggtggcttagctgtaaccatcccattaaaactagatattattgatag 1736
Query: 506 tatgtttgaattgagcgaagccgcaaagaccattggcgctgtaaacactgttattccttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 tatgtttgaattgagcgaagccgcaaagaccattggcgctgtaaacactgttattccttt 1796
Query: 566 aggaaagaacaaattcaggggtgacaatactgattggttaggtatcaaaaactctttggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 aggaaagaacaaattcaggggtgacaatactgattggttaggtatcaaaaactctttggt 1856
Query: 626 ttcaaatggtgttcctagttctgttagtggttctgcaggtctgattatcggtgctggtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 ttcaaatggtgttcctagttctgttagtggttctgcaggtctgattatcggtgctggtgg 1916
Query: 686 tacttcaagagctgctatatacgctttgaaacaaattggttgtgacaccatttatatgct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 tacttcaagagctgctatatacgctttgaaacaaattggttgtgacaccatttatatgct 1976
Query: 746 caacagaaccacggagaaactacanaagctgaaatccgaattttccgaagaatataagat 805
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1977 caacagaaccacggagaaactacaaaagctgaaatccgaattttccgaagaatataagat 2036
Query: 806 tgttgtcgttcgatctgccgaac-aacagagtc-attaaggaaacagtttctgttgctgt 863
||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct: 2037 tgttgtcgtcgaatctgccgaacaaacagagtcaattaaggaacaagtttctgttgctgt 2096
Query: 864 ttcttgtgttccagctgataagcctttana-cca-aantactaaaacaattggaaagac- 920
|||||||||||||||||||||||||||| | ||| | ||||||| ||||||||||||
Sbjct: 2097 ttcttgtgttccagctgataagcctttagatccagagttactaaacaaattggaaagact 2156
Query: 921 tttgncaaaa-gtacaaatagcttcttcaaaccaac 955
|||| ||||| |||||||||||| ||||||||||||
Sbjct: 2157 tttggcaaaaggtacaaatagctccttcaaaccaac 2192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7100
Number of Sequences: 1807
Number of extensions: 7100
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)