BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH04RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1340 0.0
3x_Contig352 212 9e-55
3x_Contig1585 198 1e-50
>3x_Contig1475
Length = 10676
Score = 1340 bits (676), Expect = 0.0
Identities = 796/827 (96%), Gaps = 8/827 (0%)
Strand = Plus / Plus
Query: 52 cacattctctgcctattgttgtaagacgaattttaggatatcatcactcattcttctacc 111
||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 8519 cacattctctgccaaaagttgtaagacgaatttttggatattatcactcattcttctacc 8578
Query: 112 ttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcagatgc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8579 ttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcagatgc 8638
Query: 172 atccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaattttcaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8639 atccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaattttcaa 8698
Query: 232 tgatggtgaatcgttaacaccatcacctgttatggcacagaacttgcttctacgatgtaa 291
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8699 tgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctacgatgtaa 8758
Query: 292 tgcctcaatcatacggaccttggtctgtggggcacaacgagcaatgactaaaggcaaaac 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8759 tgcctcaatcatacggaccttggtctgtggggcacaacgagcaatgactaaaggcaaaac 8818
Query: 352 acgtaaatcatcaatttcttgatcacttaaagcatcgaaatcagttgcggccataaccat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8819 acgtaaatcatcaatttcttgatcacttaaagcatcgaaatcagttgcggccataaccat 8878
Query: 412 gaaatttaccacttcctttggataatggtataagttatgaggtaagataccaacttcttg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8879 gaaatttaccacttcctttggataatggtataagttatgaggtaagataccaacttcttg 8938
Query: 472 agcaatggacttggcagtaccagggaagtcacctgttaacatatgcacattgattccagc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8939 agcaatggacttggcagtaccagggaagtcacctgttaacatatgcacattgattccagc 8998
Query: 532 ttgatgacattttttaacagcggcaagtgattcttgtcttggtggatcataaataccgat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8999 ttgatgacattttttaacagcggcaagtgattcttgtcttggtggatcataaataccgat 9058
Query: 592 caaccctaaaaatgttaatttacattcgacaaagtcacgttccttcaatagtttatcctt 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9059 caaccctaaaaatgttaatttacattcgacaaagtcacgttccttcaatagtttatcctt 9118
Query: 652 gttggcgttgaattccgattcgttaaaactttttttagcaaaggctaacactcttaaccc 711
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9119 gttggcgttgaattccgattcgttaaaacttttcttagcaaaggctaacactcttaaccc 9178
Query: 712 tttactagacagggtgtcaacgttcttttgaatggttttcaaattcttcttattcaaagg 771
|| ||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||
Sbjct: 9179 ttcactagacagggtgtcaacgttcttttgaatggtttccaaatcttccttactcaaagg 9238
Query: 772 cgattgggttgccatcaaggtgtgggtataccatgcagtcacatctttttaacacttttt 831
||| ||| |||||||| |||||| ||||||||| | ||||||| | || ||||| | ||
Sbjct: 9239 cga-tggtttgccatc-aggtgt-ggtatacca-ggagtcacaacattgcaacac-tctt 9293
Query: 832 tcaaatgcccctttgggggaaacccttcataaaattggggttgctgg 878
|||||||| ||||||| | ||| |||||| ||||||||||||||||
Sbjct: 9294 tcaaatgcacctttggtg--aacacttcat-aaattggggttgctgg 9337
>3x_Contig352
Length = 1459
Score = 212 bits (107), Expect = 9e-55
Identities = 245/291 (84%)
Strand = Plus / Plus
Query: 453 gtaagataccaacttcttgagcaatggacttggcagtaccagggaagtcacctgttaaca 512
||||||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 19 gtaagatgcccacttcttgagctatagacttggcagtaccagggaagtcacctgtcaaca 78
Query: 513 tatgcacattgattccagcttgatgacattttttaacagcggcaagtgattcttgtcttg 572
|||| || ||||| |||||| | ||||||||||||||||| ||||| ||||| | ||||
Sbjct: 79 tatggacgttgataccagctaggtgacattttttaacagcagcaagcgattcgcgccttg 138
Query: 573 gtggatcataaataccgatcaaccctaaaaatgttaatttacattcgacaaagtcacgtt 632
||||||| || ||||||| || || |||||||||| ||| |||||||||||||||||
Sbjct: 139 gtggatcgtatataccgactaatcccaaaaatgttagattattttcgacaaagtcacgtt 198
Query: 633 ccttcaatagtttatccttgttggcgttgaattccgattcgttaaaactttttttagcaa 692
||||||||||||| ||||||||| | |||| ||||||||||| |||| || ||||
Sbjct: 199 ccttcaatagtttgtccttgttgatagtaaattgtgattcgttaaaggttttcttggcaa 258
Query: 693 aggctaacactcttaaccctttactagacagggtgtcaacgttcttttgaa 743
| ||||||||||||| ||| | ||| || | ||| ||||| ||||||||||
Sbjct: 259 aagctaacactcttagcccctcacttgataaggtatcaacattcttttgaa 309
>3x_Contig1585
Length = 11490
Score = 198 bits (100), Expect = 1e-50
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 69 gttgtaagacgaattttaggatatcatcactcattcttctaccttcttcaacagcgttca 128
|||||| ||||||||| |||| | ||| |||||||||||||||||||| ||||| || |
Sbjct: 273 gttgtaggacgaatttctggatgttatcgctcattcttctaccttcttctacagcattta 214
Query: 129 aaatagatgcaaagttatcgtcactcaaaacgatgtcagatgcatccttggcaacatcag 188
||||||| ||||||||||| || ||||| || |||||||| |||||||| ||||| ||||
Sbjct: 213 aaatagaagcaaagttatcatcgctcaacacaatgtcagacgcatccttcgcaacgtcag 154
Query: 189 aaccattaatacccatagcaataccaacgttagcaattttcaatgatggtgaatcgttaa 248
||||||| || ||||| ||||||||||| || ||||| ||||| |||||||||||||| |
Sbjct: 153 aaccattgattcccatggcaataccaacattggcaatcttcaacgatggtgaatcgttca 94
Query: 249 caccatcacctgttatggcacagaacttgcttctacgatg 288
||||||| ||||| |||||||||||| || ||| ||||||
Sbjct: 93 caccatctcctgtcatggcacagaacctgtttcgacgatg 54
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7119
Number of Sequences: 1807
Number of extensions: 7119
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 3
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)