BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH06FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig912 1102 0.0
>3x_Contig912
Length = 2436
Score = 1102 bits (556), Expect = 0.0
Identities = 556/556 (100%)
Strand = Plus / Minus
Query: 87 ttgcttatcatttggtcattctttcgtttgctttcaataatagcaaaaatttcaaaaaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgcttatcatttggtcattctttcgtttgctttcaataatagcaaaaatttcaaaaaca 506
Query: 147 ttgctttttggtctgaaagccatcgaaaagtgagagaaatgacaaaatgaacttcgatga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgctttttggtctgaaagccatcgaaaagtgagagaaatgacaaaatgaacttcgatga 446
Query: 207 cgcagccctaaatccttttggacgcataaaacaatgatatcatgaactaaaatggcactg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgcagccctaaatccttttggacgcataaaacaatgatatcatgaactaaaatggcactg 386
Query: 267 ggtcgaaataagggattaggtttttgggctgtgctgcatttgtttcagtcgccgaggata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtcgaaataagggattaggtttttgggctgtgctgcatttgtttcagtcgccgaggata 326
Query: 327 gactctatgaaatagccccactggaagaaggttctagccccgagctttacaggtaagttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gactctatgaaatagccccactggaagaaggttctagccccgagctttacaggtaagttt 266
Query: 387 gcatggtcgagaatagtaaggtatcatcacctcggtgtttgaaaaaggaatattagacgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatggtcgagaatagtaaggtatcatcacctcggtgtttgaaaaaggaatattagacgt 206
Query: 447 cacgtgcttggaatatgagaggtttttttttcattattgggctctcagtgactgtcaatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cacgtgcttggaatatgagaggtttttttttcattattgggctctcagtgactgtcaatt 146
Query: 507 aatgaaatatgtatatgaaagataagatgagatgagatcatgaaaagaagaagctggcac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aatgaaatatgtatatgaaagataagatgagatgagatcatgaaaagaagaagctggcac 86
Query: 567 taattcaacccttccaaggtgtatttatttcttattgtctcaggaaagtggtacatttta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 taattcaacccttccaaggtgtatttatttcttattgtctcaggaaagtggtacatttta 26
Query: 627 aaatgcttaaaagatt 642
||||||||||||||||
Sbjct: 25 aaatgcttaaaagatt 10
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7894
Number of Sequences: 1807
Number of extensions: 7894
Number of successful extensions: 134
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)