BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH06RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1351 490 e-138
3x_Contig516 482 e-136
>3x_Contig1351
Length = 9242
Score = 490 bits (247), Expect = e-138
Identities = 281/287 (97%), Gaps = 4/287 (1%)
Strand = Plus / Plus
Query: 33 agcttgcagttgaagataa-ccgatttagagc-gattcaaa-gacaatttccttcttgat 89
||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 8945 agcttgcagttgaagataaaccgattaagagcagattcaaaagacaatttccttcttgat 9004
Query: 90 atcatcttttt-atagcatccgttgtaaactccggtgcattcatgtcgctcttgttcgtt 148
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9005 atcatctttttcatagcatccgttgtaaactccggtgcattcatgtcgctcttgttcgtt 9064
Query: 149 tttttcttccaagtattcatcatgttcccatctttaaactgaaagacaaggacctgtgaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9065 tttttcttccaagtattcatcatgttcccatctttaaactgaaagacaaggacctgtgaa 9124
Query: 209 tcttctacttcatcgtttacttgatgatcttctgccttcaagtcaaaaatatcattatcc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9125 tcttctacttcatcgtttacttgatgatcttctgccttcaagtcaaaaatatcattatcc 9184
Query: 269 ttttgctgatagccaccattcttgaaattgaaaactttctcttcaac 315
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9185 ttttgctgatagccaccattcttgaaattgaaaacttactcttcaac 9231
>3x_Contig516
Length = 1540
Score = 482 bits (243), Expect = e-136
Identities = 322/339 (94%), Gaps = 7/339 (2%)
Strand = Plus / Minus
Query: 595 atcactgaggttcaagtaatagagtgcttacagttggcaagtcatatgaatgaaacttga 654
||||| ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 1540 atcacagaggttcaattaatagagtgcttacagttttcaattcatatgaatgaaacttga 1481
Query: 655 atttaactctcaagtcacgtcaaaaagatactttcctgtttctaaactagagccaataca 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 atttaactctcaagtcacgtcaaaaagatactttcctgtttctaaactagagccaataca 1421
Query: 715 cttcaaagtatcgtatctggacaatgcagaagccaagtttcactagcttgaatcctctgc 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 cttcaaagtatcgtatctggacaatgcagaagccaagtttcactagcttgaatcctctgc 1361
Query: 775 tatcgtctcttatcctatagatgttaggatatcaataagtaagcgatgagatatgacatt 834
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1360 tatcgtctcttatcctatagatgttaggatatcaataagtaagcgatgagataggacatt 1301
Query: 835 taataag-aagagcatgtggatttccctt-taaattcgggt-acacc-aattgcaccca- 889
|||||| ||||||||||||||||||||| |||| ||||| ||||| ||| |||||||
Sbjct: 1300 aaataagaaagagcatgtggatttcccttaaaaatccgggtaacaccaaatagcacccat 1241
Query: 890 tttggcagttctcgaa-tcaactatg-aatctgtttcaa 926
|||||||||||||||| ||||||||| ||||||||||||
Sbjct: 1240 tttggcagttctcgaattcaactatgaaatctgtttcaa 1202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8526
Number of Sequences: 1807
Number of extensions: 8526
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)