BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH08FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1528 0.0
>3x_Contig1468
Length = 9852
Score = 1528 bits (771), Expect = 0.0
Identities = 852/877 (97%), Gaps = 5/877 (0%)
Strand = Plus / Plus
Query: 87 tatatgtccatccgtatatgcatcatatcaaggttaccctcactcaaattttttggacct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tatatgtccatccgtatatgcatcatatcaaggttaccctcactcaaattttttggacct 726
Query: 147 tgtttctttctaaaatcgaaaagatcataaaactcgatatgattaaacaataaactgaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tgtttctttctaaaatcgaaaagatcataaaactcgatatgattaaacaataaactgaaa 786
Query: 207 attgtatacataatggcaaacgaattggtttgaataggcatagctagtctatgaagtgga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 attgtatacataatggcaaacgaattggtttgaataggcatagctagtctatgaagtgga 846
Query: 267 caattacaagggttcgttaatcaacaaaatgagtttcaattcaaaccccactttcaactt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 caattacaagggttcgttaatcaacaaaatgagtttcaattcaaaccccactttcaactt 906
Query: 327 ttctacagcg-ggaaatgcttccggtgggaacagcaattccaatttgtttgccggtactg 385
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ttctacagcgcggaaatgcttccggtgggaacagcaattccaatttgtttgccggtactg 966
Query: 386 gatcaggacaaaatgtatctaccacaggaaacaccagtaccagcacaggtgcttcctctc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 gatcaggacaaaatgtatctaccacaggaaacaccagtaccagcacaggtgcttcctctc 1026
Query: 446 tctttggcaatactggaggccagaccagtggcaatgcttttgcaagtttcggttcagctg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 tctttggcaatactggaggccagaccagtggcaatgcttttgcaagtttcggttcagctg 1086
Query: 506 ctggtagctctaatacgcagcagggaaatgcattttcagcgtttggagcgaccactacca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 ctggtagctctaatacgcagcagggaaatgcattttcagcgtttggagcgaccactacca 1146
Query: 566 atgacaatggacaaacaaaacctgcattcggaggctttggtatgaatacacaacagggcg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 atgacaatggacaaacaaaacctgcattcggaggctttggtatgaatacacaacagggcg 1206
Query: 626 ctaatgcagtcaagccagcagcttcgccattttcgtttggtgcctctaatacaactgctg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 ctaatgcagtcaagccagcagcttcgccattttcgtttggtgcctctaatacaactgctg 1266
Query: 686 gtacaggcgatgcaccaaaacctgcttttggaggttttaacgcaaacgatgctgccagca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 gtacaggcgatgcaccaaaacctgcttttggaggttttaacgcaaacgatgctgccagca 1326
Query: 746 atgcgaacaataacaacagcaacaccacgaatacaagcgcagcaaaaccaacatttggtg 805
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1327 atgcgaacaataacaacagcaacaccacgaatacaagcgc--caaaaccaacatttggtg 1384
Query: 806 gcttttgcttccgtagagcagcangaagtagctcttcgctatttggcgggtcgcaacagg 865
||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1385 gctttggc-tccgtaga-aggcaggaagtagctcttcgctatttggcgggtcgcaacagg 1442
Query: 866 ctanagacacttcacccagnagtggattctcattttgtacancacctgnnacaaagaccg 925
||| ||||||| ||||| ||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1443 ctaaagacactcaacccaagagtggattctcatttggtacacaacctgaacaaaagaccg 1502
Query: 926 atgcanagcccgcttttaattnncgactatctggaaa 962
||||| ||||||||||||||| |||||||||||||
Sbjct: 1503 atgcaaagcccgcttttaatttcggactatctggaaa 1539
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5795
Number of Sequences: 1807
Number of extensions: 5795
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)