BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH08RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1534 1614 0.0
>3x_Contig1534
Length = 9979
Score = 1614 bits (814), Expect = 0.0
Identities = 860/869 (98%), Gaps = 5/869 (0%)
Strand = Plus / Plus
Query: 52 acacaaacgaaagctttgtattataaaactacgtagggatgcatctggatctatctttga 111
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6506 acacaaacgaaagccttgtattataaaactacgtagggatgcatctggatctatctttga 6565
Query: 112 tcccacagagacctcgccatggaaccatattgagtgggcagatgaccatacatccttact 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6566 tcccacagagacctcgccatggaaccatattgagtgggcagatgaccatacatccttact 6625
Query: 172 tgttctgaacagatcgaaacttacaatgattaatttcgagcagaattggcaacatgatat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6626 tgttctgaacagatcgaaacttacaatgattaatttcgagcagaattggcaacatgatat 6685
Query: 232 catacaagcaaagacgtggtcagaattaagagattataaacggatctctgaacgactcag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6686 catacaagcaaagacgtggtcagaattaagagattataaacggatctctgaacgactcag 6745
Query: 292 tctcttgctgacttcaaaagaaattattcttataaaaatccaagatcagcagataaacag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6746 tctcttgctgacttcaaaagaaattattcttataaaaatccaagatcagcagataaacag 6805
Query: 352 attgctttcttggaaacatgattgggattctcgggacccttcaattcgcatttcatacaa 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6806 attgctttcttggaaacatgattgggattctcgggacccttcaattcgcatttcatacaa 6865
Query: 412 gatatctgaagacgatcaatttggacaattgatacacgtactactcttctcaaaactcac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6866 gatatctgaagacgatcaatttggacaattgatacacgtactactcttctcaaaactcac 6925
Query: 472 tttgaaagtatatggtataatgttcggatacaaagcaaactcctgggctgttgttgtttc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6926 tttgaaagtatatggtataatgttcggatacaaagcaaactcctgggctgttgttgtttc 6985
Query: 532 taaaccatttttactatcgttaggtgacattaaaagtaaggacggattgaacagcattga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6986 taaaccatttttactatcgttaggtgacattaaaagtaaggacggattgaacagcattga 7045
Query: 592 gtttccagataccagtaattacactaatgatttagatgatggtggcgatcgcggggtttc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7046 gtttccagataccagtaattacactaatgatttagatgatggtggcgatcgcggggtttc 7105
Query: 652 cacagatcttgtttgcatcactgggttcattggatcggataccgtgatacaaggattttt 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7106 cacagatcttgtttgcatcactgggttcattggatcggataccgtgatacaaggattttt 7165
Query: 712 atccacaacagactcaggaaaccatatccggctaaacctagagtatccatcatgggatta 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7166 atccacaacagactcaggaaaccatatccggctaaacctagagtatccatcatgggatta 7225
Query: 772 tagaggtgactttttggataaaatatccaaaatttttacagtagag-ttaccagtttgcg 830
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct: 7226 tagaggtgactttttggataaaatatccaaaatttttacag-agagtttaccag-ttgcg 7283
Query: 831 ccaataagtcaccaagcagattatgagtaccaaatgtttcaagagtatgggtnttaattt 890
||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct: 7284 ccaataagtcaccaagcagataatgagtaccaaatgttccaagagtatgggta-taattt 7342
Query: 891 gttcagaaaagctgaatgagctactggat 919
| |||||||||||||||||||||||||||
Sbjct: 7343 g-tcagaaaagctgaatgagctactggat 7370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6420
Number of Sequences: 1807
Number of extensions: 6420
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)