BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH09FM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1295 1602 0.0
>3x_Contig1295
Length = 7117
Score = 1602 bits (808), Expect = 0.0
Identities = 881/898 (98%), Gaps = 6/898 (0%)
Strand = Plus / Plus
Query: 86 atcagctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 atcagctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcatt 945
Query: 146 aacttcgcctcgctcctaatgtaaagatatatacctaagaaataataaggaatgataagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 aacttcgcctcgctcctaatgtaaagatatatacctaagaaataataaggaatgataagt 1005
Query: 206 gaatctatccaaaaacctggtccaactattcttcaacctagttttctttcactgtgtgag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gaatctatccaaaaacctggtccaactattcttcaacctagttttctttcactgtgtgag 1065
Query: 266 tcacactattataccaaatacccatatgtaagttacatcttttttcagtgtcactatcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 tcacactattataccaaatacccatatgtaagttacatcttttttcagtgtcactatcaa 1125
Query: 326 aactcctgtattgttatccataaactttagaaatacagtacagtgcgtatcccgatgtag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 aactcctgtattgttatccataaactttagaaatacagtacagtgcgtatcccgatgtag 1185
Query: 386 acagaatttccggtactctacctccaacttaatgccatatgcctgcgtatcgtgacgctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 acagaatttccggtactctacctccaacttaatgccatatgcctgcgtatcgtgacgctt 1245
Query: 446 tcgaccgaaatgaatttcgggataatagctacatacatatatacatctcatatcttccac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 tcgaccgaaatgaatttcgggataatagctacatacatatatacatctcatatcttccac 1305
Query: 506 cgaacaaggttggagattgttaactcccagttcgtcactcggacttttttatgcatgttc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 cgaacaaggttggagattgttaactcccagttcgtcactcggacttttttatgcatgttc 1365
Query: 566 gggattagacaggaggctttcactatgtgttatatcaaatgttctggtttctctttgtcg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 gggattagacaggaggctttcactatgtgttatatcaaatgttctggtttctctttgtcg 1425
Query: 626 ctatataaagcaataaattggtttgaaatcaaaaattccatcataagaaaaacgtccctt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 ctatataaagcaataaattggtttgaaatcaaaaattccatcataagaaaaacgtccctt 1485
Query: 686 tatttctataggagacaaaactccattatatatggagaacacaggaacggtttttttctt 745
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1486 tatttctataggagacaaaactccattatatagggagaacacaggaacggtttttttcta 1545
Query: 746 acttcacagatacaatagattaactgagtcatataacaaggtgtgttagttatattgcgt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 acttcacagatacaatagattaactgagtcatataacaaggtgtgttagttatattgcgt 1605
Query: 806 atacattgnttcagaagttacagtatccggttagcgttgtgtggaaagttagatattatt 865
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 atacattgtttcagaagttacagtatccggttagcgttgtgtggaaagttagatattatt 1665
Query: 866 ttaccgcttattagtgaagaaccctcanaattt-atatgatcaggaacagagggatttat 924
||||||||||| ||||||||| ||||| ||||| ||| |||||| ||||||||||| |||
Sbjct: 1666 ttaccgcttataagtgaagaa-cctcagaatttaataggatcagaaacagagggatatat 1724
Query: 925 tcacttatatcttaaccaggccatgggaaaatgttccaggttaaaatatgatagccct 982
|||| |||||| ||||| |||||||| |||||||||||| |||||| ||||||||||
Sbjct: 1725 acactaatatctaaacca-gccatggg-aaatgttccagg-taaaat-tgatagccct 1778
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6337
Number of Sequences: 1807
Number of extensions: 6337
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)