BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC18ZH09RM1.SCF screened BAC_end (970 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig197 1518 0.0 >3x_Contig197 Length = 1712 Score = 1518 bits (766), Expect = 0.0 Identities = 816/830 (98%), Gaps = 2/830 (0%) Strand = Plus / Minus Query: 45 gctttatattattgatgtttcgcatgccgtacaaccagaacatcctatgtctctagattt 104 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1480 gctttatattattgatgtttcgcaatccgtacaaccagaacatcctatgtctctagattt 1421 Query: 105 cctaagaatggatattaagaatgttaactcatatttccaaaaattgggaattgacatttt 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1420 cctaagaatggatattaagaatgttaactcatatttccaaaaattgggaattgacatttt 1361 Query: 165 ccctgaacgggtgatcttccagttcatcatcagtgaggtcttagacaaattcaagggtga 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1360 ccctgaacgggtgatcttccagttcatcatcagtgaggtcttagacaaattcaagggtga 1301 Query: 225 ttacagatcaagcgatgatctagaaacatatgttgccgacaatttacctctaaagttgac 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 ttacagatcaagcgatgatctagaaacatatgttgccgacaatttacctctaaagttgac 1241 Query: 285 tgatgaagacgaagctgaagatgaagtgttcagatctttacatttgataagaaatttggg 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1240 tgatgaagacgaagctgaagatgaagtgttcagatctttacatttgataagaaatttggg 1181 Query: 345 tggtttagaggaaagagattttgatagattcactgatggtaaatttgacctactgaaatc 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 tggtttagaggaaagagattttgatagattcactgatggtaaatttgacctactgaaatc 1121 Query: 405 attaattgctaatgaaaacaggaaatattccgaaaatttcacagcatcggagcaatatga 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 attaattgctaatgaaaacaggaaatattccgaaaatttcacagcatcggagcaatatga 1061 Query: 465 actctcttcttctgatgacgaggaagatgacgtagatggtgatgatctccctaacctcgt 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1060 actctcttcttctgatgacgaggaagatgacgtagatggtgatgatctccctaacctcgt 1001 Query: 525 aacggatatcaatgaagatgacatagctggatcagatgaagatgatgatagtgatgaaac 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1000 aacggatatcaatgaagatgacatagctggatcagatgaagatgatgatagtgatgaaac 941 Query: 585 taacgatagttctgatggtgatggatgggtctccgataaagacactccactgaaagg-aa 643 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 940 taacgatagttctgatggtgatggatgggtctccgataaagacactccactgaaaggaaa 881 Query: 644 aaaagtacgaagataaagatgctaaaaaacaacgtaagcaataaacaaaagaggccaaac 703 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 880 aaaagtacgaagataaagatgctaaaaaacaacgtaagcaagaaacaaaagaggccaaac 821 Query: 704 gtgaaaagaggaagaccaaagttaaaaaacacgtttagaaaaagctcattaacaagacga 763 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct: 820 gtgaaaagaggaagaccaaagtaaaaaaacacgttaagaaaaagctcattaacaagacga 761 Query: 764 taagctagaattgatcaatttaaaatttctatgcaatttcaaatatttaatatttactta 823 |||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 760 aaagcaagaaatgatcaatttaaaaattctatgcaatgtcaaatatttaatatttactta 701 Query: 824 gcgattttaaatagatccaccgctttgatgtttgccttacaagacctgcc 873 ||||| |||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 700 gcgatgttaaatagatccaccgctttgatg-ttgccctacaagacctgcc 652 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,308 Number of Sequences: 1807 Number of extensions: 10308 Number of successful extensions: 101 Number of sequences better than 1.0e-20: 1 length of query: 970 length of database: 10,358,551 effective HSP length: 16 effective length of query: 954 effective length of database: 10,329,639 effective search space: 9854475606 effective search space used: 9854475606 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)