BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC18ZH10FM1.SCF screened BAC_end
         (963 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig508                                                         1677   0.0  

>3x_Contig508 
          Length = 2437

 Score = 1677 bits (846), Expect = 0.0
 Identities = 869/876 (99%), Gaps = 1/876 (0%)
 Strand = Plus / Minus

                                                                        
Query: 89   acgcaaagaatgtgagtgcaaccgtttcgtataaaaacaacttcgatgcgttggctactc 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 acgcaaagaatgtgagtgcaaccgtttcgtataaaaacaacttcgatgcgttggctactc 2162

                                                                        
Query: 149  tcctaagcaattacgaaaatttgatcaacgatacacatatgatttttattccaggtccaa 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 tcctaagcaattacgaaaatttgatcaacgatacacatatgatttttattccaggtccaa 2102

                                                                        
Query: 209  atgatccgtggacatcaatggttggactaggtactactactatgtggccccaaaaaataa 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 atgatccgtggacatcaatggttggactaggtactactactatgtggccccaaaaaataa 2042

                                                                        
Query: 269  ttccatcatcatttactcaaaaaatgagtagaatttgtagaaaagtgcattggggctcta 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 ttccatcatcatttactcaaaaaatgagtagaatttgtagaaaagtgcattggggctcta 1982

                                                                        
Query: 329  acccattaagaattgcatatctatcacaagagattgttctgacacgcgatgatttagcaa 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 acccattaagaattgcatatctatcacaagagattgttctgacacgcgatgatttagcaa 1922

                                                                        
Query: 389  atagatttaaaagatacaatattgttttccctactgtggaagaggagaaatatctggaaa 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 atagatttaaaagatacaatattgttttccctactgtggaagaggagaaatatctggaaa 1862

                                                                        
Query: 449  atgcagaacttcaagagcaatattcaagaaacccggatgtttcagtaggccagttaatcg 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 atgcagaacttcaagagcaatattcaagaaacccggatgtttcagtaggccagttaatcg 1802

                                                                        
Query: 509  cattcaagaataatttgcctgtaagtgttttagaatcgaggaaattggtgaaaacattgc 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 cattcaagaataatttgcctgtaagtgttttagaatcgaggaaattggtgaaaacattgc 1742

                                                                        
Query: 569  tcgatcaacaacatctatctccgttttcatcaagaattcgaccaactgtttgggatcttg 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 tcgatcaacaacatctatctccgttttcatcaagaattcgaccaactgtttgggatcttg 1682

                                                                        
Query: 629  atttcacattgcagctatcaccgcttccatcgagtatcatgctgtgtgacactagcgcac 688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 atttcacattgcagctatcaccgcttccatcgagtatcatgctgtgtgacactagcgcac 1622

                                                                        
Query: 689  cagctttcgatgtaacgtacaacggatgcaaaacgatcaaccccggtagatttattcaca 748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 cagctttcgatgtaacgtacaacggatgcaaaacgatcaaccccggtagatttattcaca 1562

                                                                        
Query: 749  aaagagctgccaaatatatagaattcttccctgcttnctaggttctagtagaggaagagc 808
            ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 1561 aaagagctgccaaatatatagaattcttccctgcttctaaggttctagtagaggaagagc 1502

                                                                        
Query: 809  taccattttaatttatcaatattaaactacttgtggacctactttttgcggtcgntagca 868
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1501 taccattttaatttatcaatattaaactacttgtggacctactttttgcggtcgttagca 1442

                                                                        
Query: 869  ttcataatttattttagtttcttagacactaatctgagtacttgcgttggaaatattt-g 927
            |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 1441 ttcataatttatttaagtttctaagacactaatctgagtacttgcgttggaaatatttcg 1382

                                                
Query: 928  tcaccgtatatggcatacagtatactggatcaatat 963
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tcaccgtatatggcatacagtatactggatcaatat 1346


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6704
Number of Sequences: 1807
Number of extensions: 6704
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)