BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH10RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1546 0.0
>3x_Contig1788
Length = 28493
Score = 1546 bits (780), Expect = 0.0
Identities = 853/871 (97%), Gaps = 5/871 (0%)
Strand = Plus / Minus
Query: 47 ccgctattgctcctgtctataatcccccaaatagtacctagagtttgagttggtaacttt 106
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 18205 ccgctattgctcctgtcacacaacccccaaatagtacctagagtttgagttggtaacttt 18146
Query: 107 gctttaaggaagatttctcttgctttattaccagctaggaaaccgctttcttccgttgat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18145 gctttaaggaagatttctcttgctttattaccagctaggaaaccgctttcttccgttgat 18086
Query: 167 ctgtcaaataattgggcaaacttggcataatcatgaggagtgcatacaggaatgacggaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18085 ctgtcaaataattgggcaaacttggcataatcatgaggagtgcatacaggaatgacggaa 18026
Query: 227 taagttggcgacgaacccgtattagttctgctcaccgatctattgataacagaggggact 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18025 taagttggcgacgaacccgtattagttctgctcaccgatctattgataacagaggggact 17966
Query: 287 ctctggacagaatgagactgatttgatggtggtgggatagatggttgtgtagaagcagag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17965 ctctggacagaatgagactgatttgatggtggtgggatagatggttgtgtagaagcagag 17906
Query: 347 ttgaacttttgactttgtccgaatgaagggagcttcgaagcaggagtctgatacaattct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17905 ttgaacttttgactttgtccgaatgaagggagcttcgaagcaggagtctgatacaattct 17846
Query: 407 aaagtaacttgcgcacctggattttcctgtaagtgcgcaaccattcttagagcggcgtta 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17845 aaagtaacttgcgcacctggattttcctgtaagtgcgcaaccattcttagagcggcgtta 17786
Query: 467 aattgatcaacagttaagaagcccgcgttttcggtatcgcaaatggtccatatttgcgac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17785 aattgatcaacagttaagaagcccgcgttttcggtatcgcaaatggtccatatttgcgac 17726
Query: 527 aactgttgcggagttaaccctgattgactaaacaaaggtcttaaagcttctccagtcaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17725 aactgttgcggagttaaccctgattgactaaacaaaggtcttaaagcttctccagtcaca 17666
Query: 587 attcccaattgttctctatctaaccgagaaaagtgctgggaaaatgcttgcttttcctca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17665 attcccaattgttctctatctaaccgagaaaagtgctgggaaaatgcttgcttttcctca 17606
Query: 647 ctagtgaggggtacacggaacgcaatacctgacatggttcccagaggcgtggtggatgtg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17605 ctagtgaggggtacacggaacgcaatacctgacatggttcccagaggcgtggtggatgtg 17546
Query: 707 tatctgttgcagtttatcggctatatttcacggaaggggttttcgaccatttgatccaat 766
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 17545 tatctgttgcagtttatcggctatatttcacgaaagggg-tttcgaccatttgatccaat 17487
Query: 767 ttgtcngtattcaattatctcaaaaagatgatgaaactatataatcgtgcaagatgactt 826
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 17486 ttgtcgttattcaattatctcaaaaagatgatgaaactatataatcgtgcaagatgac-t 17428
Query: 827 ttcggatcgcataaagaaatgaagcattgatgtaggaattaaggtttccaatgcgattag 886
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 17427 ttcggatcgcataaagaagtgaagcattgatgtagg-attaaggtttccaatgcgatgag 17369
Query: 887 nagagttaagttttacactttcatttagaaa 917
|||||| ||||| ||| ||||||||||||
Sbjct: 17368 -agagttgagtttatcac-ttcatttagaaa 17340
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5135
Number of Sequences: 1807
Number of extensions: 5135
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)