BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH11RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1667 0.0
>3x_Contig1488
Length = 9807
Score = 1667 bits (841), Expect = 0.0
Identities = 864/869 (99%), Gaps = 2/869 (0%)
Strand = Plus / Plus
Query: 41 accatcgctccaacttctaacgcagagctaaatcggaaagcaatgacttttt-aacagtc 99
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7893 accatcgctccaactcctaacgcagagctaaatcggaaagcaatgactttttcaacagtc 7952
Query: 100 gttgaagagctaagtgacaagtttgctgtccgtccaatagcacacattggaagatacaag 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7953 gttgaagagctaagtgacaagtttgctgtccgtccaatagcacacattggaagatacaag 8012
Query: 160 tctactttaccttccaaccctaaccttgaagtgaagaaacccactacgatattaaatcat 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8013 tctactttaccttccaaccctaaccttgaagtgaagaaacccactacgatattaaatcat 8072
Query: 220 tcgctattagaagcgcttaacaaatcattgacgtttgactctcccaatgttatcaagtta 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8073 tcgctattagaagcgcttaacaaatcattgacgtttgactctcccaatgttatcaagtta 8132
Query: 280 acattaaatggagataattttattgtttcaaagttcaatcagaatgctgaagaaactctt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8133 acattaaatggagataattttattgtttcaaagttcaatcagaatgctgaagaaactctt 8192
Query: 340 cgggaaatgttagatagcgttgtaaagtttggtgggcctgactatgaggtgaacagtctt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8193 cgggaaatgttagatagcgttgtaaagtttggtgggcctgactatgaggtgaacagtctt 8252
Query: 400 gctaagagtttggccgaatttttgttttcttggacgtcaacagaagtgtacgatataatc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8253 gctaagagtttggccgaatttttgttttcttggacgtcaacagaagtgtacgatataatc 8312
Query: 460 gaaaggtttcatcacgaattcagagccaaagttaatagtttaagagaacgggcgaagccc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8313 gaaaggtttcatcacgaattcagagccaaagttaatagtttaagagaacgggcgaagccc 8372
Query: 520 attcattttttctttatcgcagtatgtcagcttcttttccttgaaattagtagatatttc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8373 attcattttttctttatcgcagtatgtcagcttcttttccttgaaattagtagatatttc 8432
Query: 580 tctacttctatatcagtcagaaatcagataccagagaagataactgaccacataatatct 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8433 tctacttctatatcagtcagaaatcagataccagagaagataactgaccacataatatct 8492
Query: 640 ttctttaaactttattctaagtgtgagattattaacctttatcgaaataatgatacaatg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8493 ttctttaaactttattctaagtgtgagattattaacctttatcgaaataatgatacaatg 8552
Query: 700 actgaagccatatcgttattaaggtttgtcattgaatacttaaagtgtgaggagatgttg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8553 actgaagccatatcgttattaaggtttgtcattgaatacttaaagtgtgaggagatgttg 8612
Query: 760 tggcagaaactacgacggaataaattttcacccgccgtcgctggagtaatagcaatgaca 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8613 tggcagaaactacgacggaataaattttcacccgccgtcgctggagtaatagcaatgaca 8672
Query: 820 tttagaaccaataagcaatgttggagtatggtgaaggtgaattagacgtatcaagatgct 879
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8673 tttagaaccaataagcaatgttggagtatggtgaaggtgaatcagacgtatcaagatgct 8732
Query: 880 gtattttggatcaaattt-ttggcatatg 907
|||| ||||||||||||| ||||||||||
Sbjct: 8733 gtatcttggatcaaatttattggcatatg 8761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7123
Number of Sequences: 1807
Number of extensions: 7123
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)