BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH12FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 1622 0.0
>3x_Contig1760
Length = 27266
Score = 1622 bits (818), Expect = 0.0
Identities = 879/892 (98%), Gaps = 7/892 (0%)
Strand = Plus / Plus
Query: 87 tacaagtaaagatactgagattatagaaagagatttacatcggactttccctgataatat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7211 tacaagtaaagatactgagattatagaaagagatttacatcggactttccctgataatat 7270
Query: 147 ccatttccaaagatccaaggtcagttccgaggacccactaattataaaatctttaaggag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7271 ccatttccaaagatccaaggtcagttccgaggacccactaattataaaatctttaaggag 7330
Query: 207 gatcttaaaggctttcgccatctataacgctaagatcggttattgtcaatcgatgaattt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7331 gatcttaaaggctttcgccatctataacgctaagatcggttattgtcaatcgatgaattt 7390
Query: 267 cttagttggtcttttactattattcatggatgaagaacgtgcattttggatgctagtaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7391 cttagttggtcttttactattattcatggatgaagaacgtgcattttggatgctagtaat 7450
Query: 327 aatgacatctaggtacttaccaggagtgcatagtattaacctggaaggtgtcaatattaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7451 aatgacatctaggtacttaccaggagtgcatagtattaacctggaaggtgtcaatattaa 7510
Query: 387 ccaaggtgtgcttttactatgcataaaagagtatctgccacacttttggcaaagaatata 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511 ccaaggtgtgcttttactatgcataaaagagtatctgccacacttttggcaaagaatata 7570
Query: 447 ttccaataaagatcaacaacacagtcccggcctatccaataagaacgaatttctctataa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7571 ttccaataaagatcaacaacacagtcccggcctatccaataagaacgaatttctctataa 7630
Query: 507 gttgccaccagtcacactctgtactgccagttggttcatgagctgtttcataggagtagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7631 gttgccaccagtcacactctgtactgccagttggttcatgagctgtttcataggagtagt 7690
Query: 567 acctattgaagctaccttacgtatat--gggattgtctcttctatgagggttcacacatt 624
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7691 acctattgaagctaccttacgtatatgcgggattgtctcttctatgagggttcacacatt 7750
Query: 625 cttttcaagatgtcgttagcgatcatcgaactaagcgagaccaatttaccaaaattaaat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7751 cttttcaagatgtcgttagcgatcatcgaactaagcgagaccaatttaccaaaattaaat 7810
Query: 685 cacgttagcagccgaaactcagacgatgaagacatggaattattccaagctattcaaaca 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7811 cacgttagcagccgaaactcagacgatgaagacatggaattattccaagctattcaaaca 7870
Query: 745 taccctagacggttgataaaccccaacgatattatagacaaagccatcttcaagaggaga 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7871 taccctagacggttgataaaccccaacgatattatagacaaagccatcttcaagaggaga 7930
Query: 805 ttgagattcaatgcactcaatcaagaggaaatcgaacgatgtaagaagtacgttatctct 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7931 ttgagattcaatgcactcaatcaagaggaaatcgaacgatgtaagaagtacgttatctct 7990
Query: 865 caaagagcc-aatacaagaacttccagaatgtaatgaagaatgaaaccacc-actcncat 922
||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct: 7991 caaagagccaaatacaagaacttccaagatgtaatgaagaatgaaaccaccaactccaat 8050
Query: 923 aaataga-agactcc-aattggcacaggaactgatc-atgaaaccttttcta 971
|| ||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 8051 aataagagagactccaaattggcacaggaactgatcaatgaaaccttttcta 8102
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6624
Number of Sequences: 1807
Number of extensions: 6624
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)