BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZH12RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 1507 0.0
>3x_Contig1142
Length = 5741
Score = 1507 bits (760), Expect = 0.0
Identities = 870/895 (97%), Gaps = 9/895 (1%)
Strand = Plus / Minus
Query: 43 cttatgtttataagccggatcttttaatacctcatctataccttgtaagtatcctgtaga 102
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 cttatgtttataagccggatcctttaatacctcatctataccttgtaagtatcctgtaga 1011
Query: 103 gcaatgtgcgaccaaaaacttgccagtatttgcaaggatttttttattctgatcttcttg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gcaatgtgcgaccaaaaacttgccagtatttgcaaggatttttttattctgatcttcttg 951
Query: 163 tgcatattgcattaccttgtcatataaagtctttgcgtaaaaccctggtgaacaaattat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 tgcatattgcattaccttgtcatataaagtctttgcgtaaaaccctggtgaacaaattat 891
Query: 223 gatgcatttcagtgtgtcaaaatcgaaatgtctaaccatggacgcataagtggctctgta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gatgcatttcagtgtgtcaaaatcgaaatgtctaaccatggacgcataagtggctctgta 831
Query: 283 aaatttctctaccttgtcatcaaacttcattatatctgtacctctcttcttctttggaat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 aaatttctctaccttgtcatcaaacttcattatatctgtacctctcttcttctttggaat 771
Query: 343 gctatattcgatcttatgctttaataccgtagagaatgaattgatcaagcaaatgtggga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gctatattcgatcttatgctttaataccgtagagaatgaattgatcaagcaaatgtggga 711
Query: 403 aataccttcttgtaagacaacagctgccatatcagaacgaccctcaatattacaagcttg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aataccttcttgtaagacaacagctgccatatcagaacgaccctcaatattacaagcttg 651
Query: 463 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 591
Query: 523 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 531
Query: 583 atcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaactctga 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaactctga 471
Query: 643 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 411
Query: 703 tgtcttggatgtgactttcttcttanagatgatctcatcatcagtattgataatgttgta 762
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgttgta 351
Query: 763 cagtgtgaataaatcttctttattcttgagttgaagaagtc-aaatggcttttttcccca 821
||||||||||||||||||||||| || ||||||| |||| ||||||| | ||||||||
Sbjct: 350 cagtgtgaataaatcttctttatcctgaggttgaag-agtcaaaatggc-tctttcccca 293
Query: 822 ctgtgtngaaccgttcactttatttgatt-acctcattgcttcttttaccgttaacttgg 880
|||||| |||||| |||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 292 ctgtgt-gaaccggtcacttta-ttgattaacctcattgcttctttacccgttaacttga 235
Query: 881 aacacctttttggttacgttcttgtattaaaggctgtnttcaat-aattgctgtc 934
|||||| ||||| ||||||| |||||||| ||||| |||||| ||||||||||
Sbjct: 234 gacacctctttgggtacgttc-tgtattaagtgctgt-ttcaataaattgctgtc 182
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7840
Number of Sequences: 1807
Number of extensions: 7840
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)